BAC Information

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BAC

Clone NameMSMg01-272J21
Chromosome11 (Build37)2 (Build37)
Map Location 70,845,105 - 70,845,470122,546,099 - 122,546,326
singlet/doubletsingletsinglet
Overlap gene6330403K07Rik
Upstream geneDlg4, Asgr1, Asgr2, Mgl2, Mgl1, Slc16a11, Slc16a13, Bcl6b, 0610010K14Rik, D11Bwg0434e, Alox12, Alox12e, Alox15, LOC668466, Pelp1, Arrb2, Med11, Cxcl16, Zmynd15, Tm4sf5, Vmo1, C730027E14Rik, Psmb6, Pld2, Mink1, Chrne, LOC668433, Gp1ba, Slc25a11, Rnf167, Pfn1, Eno3, Spag7, Camta2, AI842396, Kif1c, LOC668488, Zfp3, A430084P05Rik, Rabep1, LOC668461, Nup88, Rpain, C1qbp, Dhx33, Derl2, Mis12
Downstream geneLOC382536, Nlrp1a, Nlrp1b, Nlrp1c, LOC100043249, 9230020A06Rik, Wscd1, Aipl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-272J21.T7 (MSMg01no272_j21.b1)MSMg01-272J21.TJ (MSMg01no272_j21.g1)
ACCAG411853AG411854
length747744
length of high quality
(start - end)		366 (380 - 745)229 (436 - 664)
definitionCHROMAT_FILE: MSMg01no272_j21.b1 PHD_FILE: MSMg01no272_j21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:11:49 2005CHROMAT_FILE: MSMg01no272_j21.g1 PHD_FILE: MSMg01no272_j21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:11:49 2005
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(70,845,105 - 70,845,470)(122,546,099 - 122,546,326)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CGTGTGTTCCTCAGATGAGACTGAGGGCTTTCCTTTGCTGCGGCCCATAG
GAGGACTGTGCTATAGAACTCTATGGTGACTTCATTTCAGCCTGGAGGCC
TTCTAAAGCTGTGATACCAAGATGAAGAGGCTGGGACTAAGGACTGTCAG
TAACAGAGTTCCTGCTGAAATCTGTCATCTCAGACTCAAAAAAGTGAATA
CCAGAACTCGCGTTTGCAGGTTATTCACCTACCCACTGTTTGTTTATTCA
TGTCAGCTGTTCAAATGCAAAACTTTTTAACACTGCTATACTCTGTGGAA
ATGTCTATAATTTTTTCATGCCCGATGGAATAAATCATATTCTCAGTGTC
CTCTGTATTCGTTTGTCCACCAGCTTCCAGCTGTATGATGGCCCTTGACA
GATTTCCTGTTCTGCTCTAGCTTTCACTCCCTTCTCTTTAAAACCTGCCC
ACTCTCCCTGGAAAGCTGACTTGGTTACACGGCATTTCTAGGTACAGAAT
CTCTCCACACCAAATAGCTATACGGGCCCCTCTGTGGCATCTGCCACTAT
GTCCAGATTCCTAGTTCCACAATCCCCTAACAGCAGTCTGACTTCGCCAC
ATGGTGCCATTCCCCATTGCTCAGTGTAAGAATCCCACTCAATCCCTATC
AAGAGGCTTCTGGCTCAGCTAAGCTCTGGATTGACCCAGCTTGAGTN

GAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXTTCAGAAATACCCAGGCAGAGAGAATGTCTCCTGGCAGACACT
GGTTTTGTTTCTTATTCCCCGACTGAAGTCTAACTTGGCTGGGGTTGGGC
TCTGTGAGGCCTGCACAGAGCAATGAAGGAAGAGCCTGGAGCAGTAAGGG
AGCCAGGGAGTTAATTGACAGTTGCCCAAGACAAGTACACTCCGGAGGAG
AAGAGAAAAGACTGACAGTTCAGTGTGTAAAGGTGAGGAAACTGGTTGTA
CCACAAACTCAACTGTACTTTCTCTTTTGCAGTTACTGGCAAGGGGGAGG
TGGCGGTTTTGGTAGTCTCCCCCACCCCCCCATCTGCAGACTGCATGAAA
GAAAATTATTCTTCAGAAAGCCCACAAAAAATTTGGTTTCTTTATTTCTA
TTCTTTCTTGTAGGCAGAGAAATAAATGTGTATCTTCACAGCCAGTGTCT
CCACGTTCACCTGCAAAGACAAACATAGCAGGTAAACAGCAGTGCATAGA
AGGAGGGGACAAACACCCTCCTCTGTCTAGAATGTTTCCCTAACATTATG
GAAAATTCTGGCGACTTTTCCAGAAACACACACGGATTCTATATATTGTA
ATTACTCGAAGCAAGAATATTATTTAGAGTTTGAATAAATAGGATGTCTG
CATGAAGATAGATTTAAGTTAGACATAAAATGATAGCAGTATGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no272_j21.b1 MSMg01no272_j21.b1 CHROMAT_FILE:
MSMg01no272_j21.b1 PHD_FILE: MSMg01no272_j21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:11:49 2005
         (366 letters)



>mm_chr11_70844905_70845670
          Length = 766

 Score =  700 bits (362), Expect = 0.0
 Identities = 365/366 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ataaatcatattctcagtgtcctctgtattcgtttgtccaccagcttccagctgtatgat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 ataaatcatattctcagtgtcctctgtattcgtttgtccaccagcttccagctgtatgat 507

                                                                       
Query: 61  ggcccttgacagatttcctgttctgctctagctttcactcccttctctttaaaacctgcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 ggcccttgacagatttcctgttctgctctagctttcactcccttctctttaaaacctgcc 447

                                                                       
Query: 121 cactctccctggaaagctgacttggttacacggcatttctaggtacagaatctctccaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 cactctccctggaaagctgacttggttacacggcatttctaggtacagaatctctccaca 387

                                                                       
Query: 181 ccaaatagctatacgggcccctctgtggcatctgccactatgtccagattcctagttcca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 ccaaatagctatacgggcccctctgtggcatctgccactatgtccagattcctagttcca 327

                                                                       
Query: 241 caatcccctaacagcagtctgacttcgccacatggtgccattccccattgctcagtgtaa 300
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 cagtcccctaacagcagtctgacttcgccacatggtgccattccccattgctcagtgtaa 267

                                                                       
Query: 301 gaatcccactcaatccctatcaagaggcttctggctcagctaagctctggattgacccag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 gaatcccactcaatccctatcaagaggcttctggctcagctaagctctggattgacccag 207

                 
Query: 361 cttgag 366
           ||||||
Sbjct: 206 cttgag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 366
Length of database: 766
Length adjustment: 9
Effective length of query: 357
Effective length of database: 757
Effective search space:   270249
Effective search space used:   270249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no272_j21.g1 MSMg01no272_j21.g1 CHROMAT_FILE:
MSMg01no272_j21.g1 PHD_FILE: MSMg01no272_j21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:11:49 2005
         (229 letters)



>mm_chr2_122545899_122546527
          Length = 629

 Score =  441 bits (228), Expect = e-128
 Identities = 228/228 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   gtttctttatttctattctttcttgtaggcagagaaataaatgtgtatcttcacagccag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 gtttctttatttctattctttcttgtaggcagagaaataaatgtgtatcttcacagccag 369

                                                                       
Query: 61  tgtctccacgttcacctgcaaagacaaacatagcaggtaaacagcagtgcatagaaggag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 tgtctccacgttcacctgcaaagacaaacatagcaggtaaacagcagtgcatagaaggag 309

                                                                       
Query: 121 gggacaaacaccctcctctgtctagaatgtttccctaacattatggaaaattctggcgac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gggacaaacaccctcctctgtctagaatgtttccctaacattatggaaaattctggcgac 249

                                                           
Query: 181 ttttccagaaacacacacggattctatatattgtaattactcgaagca 228
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ttttccagaaacacacacggattctatatattgtaattactcgaagca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 229
Length of database: 629
Length adjustment: 9
Effective length of query: 220
Effective length of database: 620
Effective search space:   136400
Effective search space used:   136400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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