BAC Information

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BAC

Clone NameMSMg01-273J22
Chromosome2 (Build37)
Map Location 138,533,465 - 138,533,753
singlet/doubletsinglet
Overlap genenone
Upstream geneBtbd3
Downstream geneLOC628103, C130053K05Rik, LOC100043792, 5430433G21Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-273J22.T7 (MSMg01no273_j22.b1)MSMg01-273J22.TJ (MSMg01no273_j22.g1)
ACCAG412570AG412571
length727726
length of high quality
(start - end)
289 (439 - 727)301 (388 - 688)
definitionCHROMAT_FILE: MSMg01no273_j22.b1 PHD_FILE: MSMg01no273_j22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:13:01 2005CHROMAT_FILE: MSMg01no273_j22.g1 PHD_FILE: MSMg01no273_j22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:13:01 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCGAGGATCCGCGGAAT
TCTTTCTCTGTTACCCTTCCTAGTTCAACTTGGACTCTACCAAGAACACC
AAATTCTGTCTCATGGATAGAACGCAAACCCTGTGGCTTCTACTTATTTA
CATGGCATATCCTCTTGTGTCTCTCACTTTAACCCATGGCTAAACATAAA
GCTTAGCAGCTGTGCATGTATAGAAAAGAATTCCAGATGTATTTCAGGAA
GGAACAGAATATCCATTTTCTTAATTTCTAAGGTGCTTTTCATAAGAAGC
ATATCTATTCAGGAAGATACCTATCAGAAAGTGCCATTCCCCTTAGTTTT
CTAATCAGCCGTATCTTGTTCTCACCTCCCCACGCGCATAGTGGCAGATG
ATGTAAATGGAGCCATGGTAGTTGATTAACTCAAGAAGGTGAATTGCAAC
ATATGTAGAAGTGGGTTATAAACATCAAATATATATAGCAAATGTGATCT
TTTAACCTGTTAAGATGTGGCATCCTTTGTTCACCAGAGCAAAGTGCCCT
TGGTTAATGTTAGTCAAGTTAATGCTATCATTTAGTGCTAGCCAAGCCTA
CTAGAGAAATTGGCAGACAAAGATGTATAGTATTGTGTGCCTGATACTAC
CAATAAGATGCAGGCTTAAAGGCAGAAAAAGTTCCGGAAGTGACTGACTC
TAANATGAAGGGGGATGGATACTCTAA
TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCTGATCTTTCCAAAACTTTTATCATGAAT
GGGTGTTGAATCTTGTCAAATGCCTTTTCTGCATCCAACGAGATGATCAT
GTGGTTTTTGTCTTTGAGTTTGTTTATATAATGGATTACATTGATGGATT
TTCGTATATTAAACCATCCCTGCATCCCTGGAATAAAACCTACTTGGTCA
GGATGGATGATTGCTTTAATATGTTCTTGGATTCGGTTAGCAAGAATTTT
ATTGAGGATTTTTGCATCAATATTCATAAGAGAAATTGGTCTGAAGTTCT
CTATCTTTGTTGTTTCTTTCTGCGCCCCCACCCCCCAGAGTAATAGTGGC
TTCATAAAATGAGTTGGGTAGAGTACCTTCTACTTCTATTTTGTGAAATA
GTTTGTGCAGAACTGGAATTAGATCTTCTTTGAAGGTCTGATAGAACTCT
GCACTAAACCCGTCTGGTCCTGGGCTTTTTTTGGCTGGGAGACTATTAAT
AACTGCTTCTATTTCTTTAGGTGATATGGGACTGTTTAGATGGTCAACTT
GATCCTGACTCAACTTTGGTACCTGGTATCTGTCCAGAAATTTGTCCATT
TCATCCAGGTTTTCCAGTTTTGTTGAGTATAACCTTTTGTANAAGGATCT
GATGGTGTTTTGGATTTCTTCAGGAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no273_j22.b1 MSMg01no273_j22.b1 CHROMAT_FILE:
MSMg01no273_j22.b1 PHD_FILE: MSMg01no273_j22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:13:01 2005
         (289 letters)



>mm_chr2_138533265_138533953
          Length = 689

 Score =  553 bits (286), Expect = e-162
 Identities = 288/289 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtgaattgcaacatatgtagaagtgggttataaacatcaaatatatatagcaaatgtgat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gtgaattgcaacatatgtagaagtgggttataaacatcaaatatatatagcaaatgtgat 260

                                                                       
Query: 61  cttttaacctgttaagatgtggcatcctttgttcaccagagcaaagtgcccttggttaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttttaacctgttaagatgtggcatcctttgttcaccagagcaaagtgcccttggttaat 320

                                                                       
Query: 121 gttagtcaagttaatgctatcatttagtgctagccaagcctactagagaaattggcagac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gttagtcaagttaatgctatcatttagtgctagccaagcctactagagaaattggcagac 380

                                                                       
Query: 181 aaagatgtatagtattgtgtgcctgatactaccaataagatgcaggcttaaaggcagaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaagatgtatagtattgtgtgcctgatactaccaataagatgcaggcttaaaggcagaaa 440

                                                            
Query: 241 aagttccggaagtgactgactctaanatgaagggggatggatactctaa 289
           ||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 441 aagttccggaagtgactgactctaaaatgaagggggatggatactctaa 489


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)