BAC Information

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BAC

Clone NameMSMg01-273K03
Chromosome2 (Build37)
Map Location 51,780,939 - 51,942,891
singlet/doubletdoublet
Overlap geneRbm43, LOC100041634, Nmi, Tnfaip6, Rif1
Upstream geneRnd3, LOC666802, LOC666810, LOC100041614, Tas2r134, LOC433426, Ppia-ps2_635.1
Downstream geneNeb, LOC100041670, Arl5a, Cacnb4, OTTMUSG00000012638, Stam2, Fmnl2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-273K03.T7 (MSMg01no273_k03.b1)MSMg01-273K03.TJ (MSMg01no273_k03.g1)
ACCAG412580AG412581
length735739
length of high quality
(start - end)		317 (39 - 355)287 (69 - 355)
definitionCHROMAT_FILE: MSMg01no273_k03.b1 PHD_FILE: MSMg01no273_k03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:13:02 2005CHROMAT_FILE: MSMg01no273_k03.g1 PHD_FILE: MSMg01no273_k03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:13:02 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(51,942,581 - 51,942,891)(51,780,939 - 51,781,225)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAA
CATATAGCCAAAATGACTGAGCATAATTATAATTCTTTTTGTTTGGTTGG
TTGTTTGGTTTTTGGCTTTGTCGAGACAGGGTTTCTCTGTGTAGCCCTGG
CTGTCCTGGAACTCATTCTGTAGACCAGGCTGGCCTTGATCTCAGAAATC
CACCTGGGTGCCGCCAGCACGCCCGGCTATTTTTTCCTCTGCTTCTCCAG
TACTAGGGTTACACTCCAGTACATTCCCATTTTCCTGGTTCAGAAGTTTG
ACTCTAGGCTACCAGGCATGTTAAGCAAGGATCCAGTCAATTTAGCTGAA
TCCTTTAGTCCTTCTCCCCGCCCCCCCATGGGGTGTAGGGGTCTCTGTGT
AGGCCTGGCCCACACCTATAAAAAAAAAAAGTTTGTAGATCAGGCTGGCC
TCAAACTCAGAGACCCACCTGCCTCTGCCTCCCAAGTGCTAGTTGTGCAC
TACCATGCCTAGCTGATGTAAGTTCAGTTACTCTTCTCTGATGTTACAAA
TTAAGCCCATGTTGAACAGTTTTTGCCTTAGCGAAGCAATCTCTGATTTC
AAGGCCAGCCATGCTATTAAATCCCCTCTTGAAAATGCACTCAATACCCT
ATATTCCCCCCCTCTTACCCCTATAACAGTCCTCTAAGGCCCACCATTCA
ATCTACTCATCGCTAATCACGACTTCGATTTTGTG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTTTCACATGTCTGACGCTGCCAGAGCAAGACC
CATCCTGGGCGTCTTGTAGACAAATGGTAGTGACGTCACCATCCACCCTC
TCCTGACACAGGACATGGTATTTGCTCAGTGTTAGATGATAAAACTCACA
CTTGTGTTTCAGATAAAGGAAAATGTCTGTGTCAAGCACAAGTGTTTCTG
GGCTGCCGGCAGGCTCAGCTACAAAGGTCCCAAGTATCGACGCCGAGTTC
TCCCTTTTCTGCAGGATCCTTCTAGGGTTCTCTCCATTCCAGTTTCTCCT
TTCACCTTTTTCTTTCCTCGCCCTCTCTAAAGGGGAAATGGCTTTTGATA
TCAAAGCCTGCTTGAGCTTCATGATGGCCAGAAATGAACCTTGCACAGAG
ATTTTCCCACTGGGTCCCAATGGGCTAAAGTTTAAAGTTGGGATTTTCTT
TTTCAGGTCCACTACTAGGCTTTCTAGCTCAATTTGAGTGCGAAAAACAG
ACAGATCAAGAATGGCCATCACATAGTTGAAGACCTACAATAAGAAAGAG
AAAACAGTCNAGACAACACTGCCTAACGGAGCATAACCTGCACACATTGT
CTCCTGCCTCTCTTCCCAGTGGCTCAGCTCTAAGGTGAAGTCCAGCGTTC
TGGCTCCTTGATCTAGATCAGCCCTACAGAGAGCCTACG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no273_k03.b1 MSMg01no273_k03.b1 CHROMAT_FILE:
MSMg01no273_k03.b1 PHD_FILE: MSMg01no273_k03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:13:02 2005
         (317 letters)



>mm_chr2_51942191_51942907
          Length = 717

 Score =  594 bits (307), Expect = e-174
 Identities = 310/311 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaacatatagccaaaatgactgagcataattataattctttttgtttggttggtt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 701 gaattcaacatatagccaaaatgactgagcataattataattctttttgtttggttggtt 642

                                                                       
Query: 65  gtttggtttttggctttgtcgagacagggtttctctgtgtagccctggctgtcctggaac 124
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 gtttggtttttggttttgtcgagacagggtttctctgtgtagccctggctgtcctggaac 582

                                                                       
Query: 125 tcattctgtagaccaggctggccttgatctcagaaatccacctgggtgccgccagcacgc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 tcattctgtagaccaggctggccttgatctcagaaatccacctgggtgccgccagcacgc 522

                                                                       
Query: 185 ccggctattttttcctctgcttctccagtactagggttacactccagtacattcccattt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 ccggctattttttcctctgcttctccagtactagggttacactccagtacattcccattt 462

                                                                       
Query: 245 tcctggttcagaagtttgactctaggctaccaggcatgttaagcaaggatccagtcaatt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 tcctggttcagaagtttgactctaggctaccaggcatgttaagcaaggatccagtcaatt 402

                      
Query: 305 tagctgaatcc 315
           |||||||||||
Sbjct: 401 tagctgaatcc 391


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 717
Length adjustment: 9
Effective length of query: 308
Effective length of database: 708
Effective search space:   218064
Effective search space used:   218064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no273_k03.g1 MSMg01no273_k03.g1 CHROMAT_FILE:
MSMg01no273_k03.g1 PHD_FILE: MSMg01no273_k03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:13:02 2005
         (287 letters)



>mm_chr2_51780739_51781425
          Length = 687

 Score =  555 bits (287), Expect = e-162
 Identities = 287/287 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttcacatgtctgacgctgccagagcaagacccatcctgggcgtcttgtagacaaatggt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttcacatgtctgacgctgccagagcaagacccatcctgggcgtcttgtagacaaatggt 260

                                                                       
Query: 61  agtgacgtcaccatccaccctctcctgacacaggacatggtatttgctcagtgttagatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agtgacgtcaccatccaccctctcctgacacaggacatggtatttgctcagtgttagatg 320

                                                                       
Query: 121 ataaaactcacacttgtgtttcagataaaggaaaatgtctgtgtcaagcacaagtgtttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ataaaactcacacttgtgtttcagataaaggaaaatgtctgtgtcaagcacaagtgtttc 380

                                                                       
Query: 181 tgggctgccggcaggctcagctacaaaggtcccaagtatcgacgccgagttctccctttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgggctgccggcaggctcagctacaaaggtcccaagtatcgacgccgagttctccctttt 440

                                                          
Query: 241 ctgcaggatccttctagggttctctccattccagtttctcctttcac 287
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctgcaggatccttctagggttctctccattccagtttctcctttcac 487


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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