Query= MSMg01no273_k15.b1 MSMg01no273_k15.b1 CHROMAT_FILE:
MSMg01no273_k15.b1 PHD_FILE: MSMg01no273_k15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:13:04 2005
(319 letters)
>mm_chr2_169983419_169984139
Length = 721
Score = 572 bits (296), Expect = e-168
Identities = 311/316 (98%), Gaps = 2/316 (0%)
Strand = Plus / Minus
Query: 5 gaattcctcccacacagacttctgcctccttctccaa-agtaatgtccgtctcccaggtg 63
||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 520 gaattcctcccacacagccttctgcctccttctccaacagtaatgtccgtctcccaggtg 461
Query: 64 ttttattgacccacttgagaaggcttccccttcccgattatcccactaaaaacagcctga 123
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 460 ttttattgacccacttgagaaggcttccccttcccgattgtcccactaaaaacagcctga 401
Query: 124 gtttgtcatcaaactccaccatgtatttcccatggtgccagtataaccacccactgagtg 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 gtttgtcatcaaactccaccatgtatttcccatggtgccagtataaccacccactgagtg 341
Query: 184 aattactagaaaaatgataagttgtttttttttttttgaaaaattatagttttctttctc 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 aattactagaaaaatgataagttgtttttttttttttgaaaaattatagttttctttctc 281
Query: 244 aatgatagggggg-aaaacatccccactgttacgtcattgttaaaattgtgaaatcaaac 302
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 280 aatgataggggggaaaaacatccccactgttacgtcagtgttaaaattgtgaaatcaaac 221
Query: 303 actcagtcagccacac 318
||||||||||||||||
Sbjct: 220 actcagtcagccacac 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 721
Length adjustment: 9
Effective length of query: 310
Effective length of database: 712
Effective search space: 220720
Effective search space used: 220720
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no273_k15.g1 MSMg01no273_k15.g1 CHROMAT_FILE:
MSMg01no273_k15.g1 PHD_FILE: MSMg01no273_k15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:13:05 2005
(673 letters)
>mm_chr2_169962560_169963636
Length = 1077
Score = 1118 bits (578), Expect = 0.0
Identities = 649/682 (95%), Gaps = 21/682 (3%)
Strand = Plus / Plus
Query: 1 cccaccagcctatgctacccagcaagatatagacataaaataaaaataaaaataaaaaca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 cccaccagcctatgctacccagcaagatatagacataaaataaaaataaaaataaaaaca 267
Query: 61 gctcctggggctgtcactatttgggaaggtgtttgtctagcatgcacaggcccaaggtct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 gctcctggggctgtcactatttgggaaggtgtttgtctagcatgcacaggcccaaggtct 327
Query: 121 ggtctggaatgtacatgtgtggtggctcatgcctatgatcctagcccttgacaggtggaa 180
| |||||| |||||||||||||||||||||| |||||||| |||||||||||||
Sbjct: 328 gatctgga------atgtgtggtggctcatgcctat-atcctagcatttgacaggtggaa 380
Query: 181 tcagagagaccagggacttaaatgcaagctctactacccccaaataacttgg-----ggg 235
|||||||||||||||||||||| |||||||||||||||||||||||||| || |||
Sbjct: 381 tcagagagaccagggacttaaaggcaagctctactacccccaaataactgggggggtggg 440
Query: 236 ggggaggcaacaaagaaccaaaatataaataatataacaatgacttaaggaggccttgtt 295
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct: 441 ggggaggcaacaaagaaccaaaatataaataatataacaatgacttaaggaggccatggt 500
Query: 296 gaggcct---gccccgaaagaggttgaccctggttacagtagaatatcaaaggccaatct 352
||||||| | ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gaggcctgggg----gaaaggggttgaccctggttacagtagaatatcaaaggccaatct 556
Query: 353 cttttctcattcctcacacccagagctgaaaccctcttcatc-gttggttcagtccccac 411
|||||||||||| ||| ||||||||||||||||||||||||| || ||||||||||| ||
Sbjct: 557 cttttctcattcatcatacccagagctgaaaccctcttcatctgt-ggttcagtccctac 615
Query: 412 acccttctgattccctcaaccttccataccagtgttcacatggcctctgggaaccctttc 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 acccttctgattccctcaaccttccataccagtgttcacatggcctctgggaaccctttc 675
Query: 472 ttgtcaggtcatctccctcatcccaacagctcataaaaacatcaccgagtaaaagattgg 531
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 ttgtcaggtcatctccctcatcccaacagctcataaaaacatcaccgagtaaaagattgg 735
Query: 532 tgaatgctaatcagctgggggcttcaatccaaggtccccaagtttcctgcaccaccccgc 591
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 736 tgaatgctaatcagctgggggcttcagtccaaggtccccaagtttcctgcaccaccccgc 795
Query: 592 tgactgcacacaccagcgcccactggatcaatattcaaacctgttactaacacagtcctg 651
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 796 tgactgcacacaccagcgcccactggatcaatattcaaacctgttactaacacagtcctg 855
Query: 652 cctcatgaccccagtgtctctt 673
||||||||||||||||||||||
Sbjct: 856 cctcatgaccccagtgtctctt 877
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 673
Length of database: 1077
Length adjustment: 10
Effective length of query: 663
Effective length of database: 1067
Effective search space: 707421
Effective search space used: 707421
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
