BAC Information

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BAC

Clone NameMSMg01-273N15
Chromosome2 (Build37)
Map Location 129,780,544 - 129,780,825
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043736, Zc3h6, LOC668894, Ttl, LOC100043738, Rpo1-2, Chchd5, LOC545461, LOC100043431, Slc20a1, A730036I17Rik, LOC671466, Ckap2l, Il1a, Il1b, OTTMUSG00000015529, LOC668896, F830045P16Rik, Sirpa, Pdyn, Ppia-ps2_1620.1, Stk35
Downstream geneTgm3, AU015228, LOC100043438, Tgm6, Snrpb, Tmc2, Nol5a, Idh3b, Ebf4, LOC668899, Cpxm1, LOC100043446, 1700020A23Rik, 4933425O20Rik, A930025D01Rik, Vps16, Ptpra, Mrps26, Oxt, Avp, 1700012O15Rik, Ubox5, Fastkd5, Prosapip1, 2600009E05Rik, Itpa, Slc4a11, 4930402H24Rik, LOC100043766, C030014O09Rik, LOC627316, Atrn
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-273N15.T7 (MSMg01no273_n15.b1)MSMg01-273N15.TJ (MSMg01no273_n15.g1)
ACCAG412744AG412745
length716722
length of high quality
(start - end)
319 (45 - 363)298 (74 - 371)
definitionCHROMAT_FILE: MSMg01no273_n15.b1 PHD_FILE: MSMg01no273_n15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:13:18 2005CHROMAT_FILE: MSMg01no273_n15.g1 PHD_FILE: MSMg01no273_n15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:13:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCCTTTTTTGCGTTGGGTCTTTGTATGGTCTTGGTTTAGGAATATT
ACTGGCTTCTTTGAAAAAAATTCCAAATGTTCTTTCATTTTCTGTTTTGT
AGAATAATTTGAAGAGCATTGGCGTGGTTCTGCTAGAATTCTGTGCTGAA
TCTATCTTTCCTGGGCTTTTTTAGTCGGGAGACTTTTAACTACCACTTCG
ATATCATTGGGAGTTAAGGCTCTTTTTTTTTTTTTTTAAAGATTTATTTA
TTATTATATCCAAGTCCACTGCTTTTATCTTCAGATGCACCAGAAGAGGG
CGTTAGATCTCATTACTAATGGTTGCGAGCCACCATGTGGTTGCTGGGAT
TTGAACTCAGGACCTTCGGAAGAGCAGCTCTTACCATGATCTATGATCAT
GATCTTCGGAAGAGTGCTCTTAACCACTGAGCCATCTCTCCAGCCCGAGT
TAAGGCTCTTTAAAAGCTTGTTTTTGTCTTATTGATTTAGTGTTTGCAGG
GCATATATATCTATAAATCTGTATGTTTCTTTTAGATTTTTCAGTTGGGT
GGAATATTGATTGTTAAGTGTATATCTATGGTTCTCTGAATTTCCTTAGT
GTCTACTGCAGTATTCACCTTTTTCACCCTGATTTCTTTAATCTGTATCC
TTTCTGCTCTTATATT
TGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCCAGCTATCCCAACATGGAGCAATCAC
AGAGTCACAGACTGTCAGAGTCCATAGGCGCTTACAGGCCACAGAGTCAT
CACCTAGCATCTTGTTTAAACACCAGAGCCGAGCCGAGCCGCTCAGGTTG
AGACATGTAGCAGAGCTCACGGGGCTCGGTCACAGGCCATCAGAGCTGTG
GGGTCACACCTCTCTTACAAAATTCTGTTTTCCACGAGATGCTCCAGGCT
TTTCTTGAACATTTTCAAGTAATATCTTCATTTGGAACTGTAGCGTCTAG
AGACAGGTAATTTTTTTTTTAGCCCCCCCACCACGCAGATTCAGAGTCTG
AATGTGTCACCTCCGTCTGGGAGAAGGGATAGATGATGCCCCCAAGTTTA
CTTCAGGGTTAGTCATTTGCTAGAACGACTCAGGACTTAGCCTATAGTAA
CAATTCAGCTAGGGGCAGAGATTTATTACAGTTAAAGGACCCTTTGTAAC
ATCAAAGGGCAGGCAGAGGAGGGAGGGGAAGCAGAGGCTAAGGAAAGCCA
GGAGCTAACTGTGCGCTTCAGGTCTCCAACGATAAATCATGACAAGCTGT
GACAGGTGATTCCTTCCAGGGACACACAGGACTGGCAGTACTCAGAATAC
ATTATCAGGCTTGTTACATAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no273_n15.g1 MSMg01no273_n15.g1 CHROMAT_FILE:
MSMg01no273_n15.g1 PHD_FILE: MSMg01no273_n15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:13:18 2005
         (298 letters)



>mm_chr2_129780344_129781040
          Length = 697

 Score =  516 bits (267), Expect = e-151
 Identities = 279/283 (98%), Gaps = 1/283 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccagctatcccaacatggagcaatcacagagtcacagactgtcagagtccataggcgctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||
Sbjct: 201 ccagctatcccaacatggagcaatcacagagtcacagactgtcagagttaataggcgctt 260

                                                                       
Query: 61  acaggccacagagtcatcacctagcatcttgtttaaacaccagagccgagccgagccgct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acaggccacagagtcatcacctagcatcttgtttaaacaccagagccgagccgagccgct 320

                                                                       
Query: 121 caggttgagacatgtagcagagctcacggggctcggtcacaggccatcagagctgtgggg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 321 caggttgagacatgtagcagagctcacggggctcggtcacaggccatcagagctgtggg- 379

                                                                       
Query: 181 tcacacctctcttacaaaattctgttttccacgagatgctccaggcttttcttgaacatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tcacacctctcttacaaaattctgttttccacgagatgctccaggcttttcttgaacatt 439

                                                      
Query: 241 ttcaagtaatatcttcatttggaactgtagcgtctagagacag 283
           ||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ttctagtaatatcttcatttggaactgtagcgtctagagacag 482


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 298
Length of database: 697
Length adjustment: 9
Effective length of query: 289
Effective length of database: 688
Effective search space:   198832
Effective search space used:   198832
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)