BAC Information

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BAC

Clone NameMSMg01-273O02
Chromosome2 (Build37)
Map Location 81,074,892 - 81,075,198
singlet/doubletsinglet
Overlap genenone
Upstream genePrdx6-rs1, Dnajc10, Frzb, Nckap1, LOC624223, Dusp19, LOC672381, Nup35, LOC103324, LOC668027, LOC100040624, LOC100040655
Downstream geneLOC100040704, Zfp804a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-273O02.T7 (MSMg01no273_o02.b1)MSMg01-273O02.TJ (MSMg01no273_o02.g1)
ACCAG412766AG412767
length742739
length of high quality
(start - end)
319 (38 - 356)288 (67 - 354)
definitionCHROMAT_FILE: MSMg01no273_o02.b1 PHD_FILE: MSMg01no273_o02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:13:20 2005CHROMAT_FILE: MSMg01no273_o02.g1 PHD_FILE: MSMg01no273_o02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:13:20 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCTT
TGTGCAATTCAAGGTGGCATATCTCTCCCTCTAATAAAGTAAATTGAGTT
CATTCATATAATAAAGTGTTGCTTAATAACTTAGAACATAGCACATGTAG
CCATTTATTTTTCCAGGGTGTTAGCCCTGCCATTAGGTAGCATGTAAATG
AAATGCCACATGCATGCACACACACAAACACAGACACACACACACACACA
CACACACACACACACACACACACACCACTTTAGTGTTTCAGGAAATCTTT
TTTCCATATTATGAAGGAAACCCCAATGCTATATCTGTTCCTTTTAGATA
TTAGTTTTTTTTTCTCTCACACCCTAATATATCCACTCAATTGAAATATA
GAGCTTCTATTTCACACAATGACATTTCTCTCCTAAGGCTGTGAAACCTG
CCTTAAGGAAGACAAATTTTTCAATATTATTGCATTTTGATATGCTCGAG
CAAACTCCCAGAAGTTTATTTTTTCATTGTGAGGTTATGGGTAGGTAGTC
CAGCTCCAGGTAGCAGGATATATATATATATATCATCATAGACTTGGGCT
CCTTGCATAGCCTGTTCATAGCTCTAGCTTCTAATATCAAAGGTACCTTA
TTAGCATAACTGAAAACACTTACTTCATCATGTGTATATCTCCCTAGTTG
GAAGAAAGAAATGAAGGAAGTTCTGACTTACCACATATGTAN
GAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTTTAGAAAAAATATGATGCCCCATAGGTGTGGAT
TTCTGTCTGGGTTTTTAATTAAATTTCATTGATCATTGTGTCTATTTTTA
TACCAACACCATGAGGTTTTCATTACTATATATCTGTAGTACAGCTTGAA
ATCAGGAATGATAATATCTCCATCAGTTGTTTTACTGTTTCAGATTGTTT
TAGCTATCTTGGGTTTTGTGATGTTCCATATGAAGTTGGGAATTGTCCTT
TCAAGGTCTGTAAAGAAATGCCTTGGAATTTTGATGGGGATTGAATTGGA
ACTGNATANTGCTTTTCCCACTTTTTTACTGTATTAATCCTGTATTAATC
CTACTGATCCATGAGCTTGAAAATTATTCCATGTTTTGGGGTTTTCTTTC
TTTCTTTCTCTATTTCTTTCTCTATTTCTTTCTTTCTTTCTTTCTTTCTT
TCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTC
TTTCTTTCTTTCTTTCTTCAAAGACTTAAGTTTTTTATCATAAAAGTTTT
TTACTTGCTTGGTTAGTGTTGCCTCAAGATATTAATACTATAAATTTCCT
TTATCATGGTTAGGTATATTTCTTGTATCATTAGNCTTTCTTGAACTTGT
ATCATGAAGGGGTGTTGGAGTTTTTTCACAGGCTGTCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no273_o02.b1 MSMg01no273_o02.b1 CHROMAT_FILE:
MSMg01no273_o02.b1 PHD_FILE: MSMg01no273_o02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:13:20 2005
         (319 letters)



>mm_chr2_81074830_81075548
          Length = 719

 Score =  563 bits (291), Expect = e-165
 Identities = 305/313 (97%), Gaps = 6/313 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctttgtgcaattcaaggtggcatatctctccctctaataaagtaaattgagttc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 gaattcctttgtgcaattcaaggtggcatatctctccctctaataaagtaaattgagttc 310

                                                                       
Query: 65  attcatataataaagtgttgcttaataacttagaacatagcacatgtagccatttatttt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 attcatataataaagtgttgcttaataacttagaacatagcacatgtagccatttatttt 250

                                                                       
Query: 125 tccagggtgttagccctgccattaggtagcatgtaaatgaaatgccacatgcatgcacac 184
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 tccagggagttagccctgccattaggtagcatgtaaatgaaatgccacatgcatgcacac 190

                                                                       
Query: 185 acacaaacacagacacacacacacacacacacacacacacacacacacacacaccacttt 244
           ||||||||||||||||||||||||| ||||||||||||||||||||||      ||||||
Sbjct: 189 acacaaacacagacacacacacacagacacacacacacacacacacac------cacttt 136

                                                                       
Query: 245 agtgtttcaggaaatcttttttccatattatgaaggaaaccccaatgctatatctgttcc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135 agtgtttcaggaaatcttttttccatattatgaaggaaaccccaatgctatatctgttcc 76

                        
Query: 305 ttttagatattag 317
           |||||||||||||
Sbjct: 75  ttttagatattag 63


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 53
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 719
Length adjustment: 9
Effective length of query: 310
Effective length of database: 710
Effective search space:   220100
Effective search space used:   220100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)