BAC Information

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BAC

Clone NameMSMg01-273O14
Chromosome2 (Build37)
Map Location 152,845,533 - 152,845,817
singlet/doubletsinglet
Overlap genenone
Upstream geneScrt2, Srxn1, Tcf15, LOC100043843, Csnk2a1, Tbc1d20, Rbck1, Trib3, LOC628060, Nrsn2, Sox12, Zcchc3, 6820408C15Rik, EG629114, LOC668930, 9230107O10Rik, 9230002F21Rik, EG654457, OTTMUSG00000015852, Defb29, 4930525K10Rik, Defb19, OTTMUSG00000015859, Defb36, OTTMUSG00000015862, Rem1, H13, Mcts2, Id1, LOC629170, Cox4i2, Bcl2l1, Tpx2, Mylk2, Fkhl18, Dusp15, Ttll9, Pdrg1
Downstream geneXkr7, BC020535, Hck, Tm9sf4, Tspyl3, Plagl2, Pofut1, Kif3b, 2500004C02Rik, Asxl1, 8430427H17Rik, Commd7, 7530422B04Rik, Dnmt3b, LOC668932, Mapre1, EG329541, LOC100043869, Spag4l, Bpil1, Bpil3, Rya3, LOC100043870, Gm1006, EG545477, Psp
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-273O14.T7 (MSMg01no273_o14.b1)MSMg01-273O14.TJ (MSMg01no273_o14.g1)
ACCAG412788AG412789
length743742
length of high quality
(start - end)
317 (35 - 351)285 (65 - 349)
definitionCHROMAT_FILE: MSMg01no273_o14.b1 PHD_FILE: MSMg01no273_o14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:13:22 2005CHROMAT_FILE: MSMg01no273_o14.g1 PHD_FILE: MSMg01no273_o14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:13:22 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTGAGGG
TAGCCTGTTTGAATTTTTGAAACAGTGTCTCATTATGTAGTCATGGCTTG
CCTGGGACTGGTTAATATAGACCAGGCTGGCCTCAAACTCATGGAGATCT
GCCTGCCTCTGCCTCCCAGTTAGTGACACTGTAGGCAAGGCCCACCATGC
CTGGTCTCGAGATGATCTTTGAGGAGTAGGCAAAAGTTTAATAAGCAGTG
TTCTGGCAGAGGAATGGAGTTCAACGAGAGGACTTAGTAATCTAGCTTGT
GTGAGGCCCTGTTTCCATCCCAGCAATGCAAATAAATAAAACTAACATGT
GAGTTTGGACCAGGGACTTTNCGCCAGGGTGAACTGTAAGTACAGACACG
GGCATATTGAAAAAGAAAAGAAAAAAAACACATGATGTCTGCCCGAGTAG
ATGGGTAGGGCTGGGTGGGGAGGTTGAAAACAGTGGATGCTAGACCAAAG
CTTTATTTTTGTTTTTCGGGACAAGGTTTCTCTGTATAGTCCTGGCTGTC
TTGGAACTCACTTTGTACACCAAGTTGGCCTCGAACTCAGAAATCTGCCT
GCTTCAGCCTCCCGAGCGCTGGGACTAAACAAGTGGTATCAACCCGCCCG
GCTCCCAAGCTTTATTCTGTGCGTGGCCGATACCCACGCTACAACACTGT
TCCTACCTAATACTGTTTTTCCCGTTCAATCACTATCGACATA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXAAGGCCAGTCTGGGATACAGAGAAGGTGGGGTGGGG
TACCCCATTCTTGCCAGCACTCCTAGACAGTTTTCTCTACTCCTTTGTCC
TGTGTGCTCTATTTTACTTAGGGTGTCATCTGTCCATCTCCCTGAGCCAG
AAAGGAGACTTTGGGAGGCCGTGAACTACTGATAAGTCCCAGAACAGTAT
GTGGCTCAGAGTAGGTGCTCAGCAATGATTCTGATGAATGAGTGAGGTGA
CAAATCAGAACTGTAACCCTGTGCTGAGATGCTAAGGTTGGGAGCAGGAT
TAGGTCATTCTCNNACGNANCGCCCGATGAAGGAAATGATGGATGAGCCA
CTCTGGAGGGTTTTGAGAAACAAAGAACATGATGAGGTCAGCCTGGGAGA
GGACCCTTCCCTGACTCTGGTGGGATGGTAGGCTGAGGAGGGCAAGTGGT
CATCTGAACTGTGATGGGTGCATTGTTAGGGGTGGGAGGTTGATACCTAA
CCCTTAAAGAGGTGACCAGCTGCAGCTGCATTGGGGGTGTATAGTACAGC
CTAGCTCTGTTATCACTGTCCGAATGTTCCAGACAGCCTTGCGTGGTCGC
CTCACCAGTTCGGTTCCATATTTAGTCTAGGTGCCCACACTCCTGTGCTC
GCCCTGAATGTGATTCGTTTGCCCCGCGTGGTCCCCTGCTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no273_o14.g1 MSMg01no273_o14.g1 CHROMAT_FILE:
MSMg01no273_o14.g1 PHD_FILE: MSMg01no273_o14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:13:22 2005
         (285 letters)



>mm_chr2_152845333_152846017
          Length = 685

 Score =  520 bits (269), Expect = e-152
 Identities = 281/285 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaggccagtctgggatacagagaaggtggggtggggtaccccattcttgccagcactcct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaggccagtctgggatacagagaaggtggggtggggtaccccattcttgccagcactcct 260

                                                                       
Query: 61  agacagttttctctactcctttgtcctgtgtgctctattttacttagggtgtcatctgtc 120
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 261 agacagttttctctactcctttgtcctgtgtgctctactttacttagggtgtcatctgtc 320

                                                                       
Query: 121 catctccctgagccagaaaggagactttgggaggccgtgaactactgataagtcccagaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 catctccctgagccagaaaggagactttgggaggccgtgaactactgataagtcccagaa 380

                                                                       
Query: 181 cagtatgtggctcagagtaggtgctcagcaatgattctgatgaatgagtgaggtgacaaa 240
           |||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| ||
Sbjct: 381 cagtatgtggctcagagtagatgctcagcaaggattctgatgaatgagtgaggtgacgaa 440

                                                        
Query: 241 tcagaactgtaaccctgtgctgagatgctaaggttgggagcagga 285
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcagaactgtaaccctgtgctgagatgctaaggttgggagcagga 485


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 685
Length adjustment: 9
Effective length of query: 276
Effective length of database: 676
Effective search space:   186576
Effective search space used:   186576
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)