BAC Information

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BAC

Clone NameMSMg01-273P03
Chromosome2 (Build37)
Map Location 153,066,292 - 153,231,166
singlet/doubletdoublet
Overlap genePlagl2, Pofut1, Kif3b, 2500004C02Rik, Asxl1
Upstream geneCsnk2a1, Tbc1d20, Rbck1, Trib3, LOC628060, Nrsn2, Sox12, Zcchc3, 6820408C15Rik, EG629114, LOC668930, 9230107O10Rik, 9230002F21Rik, EG654457, OTTMUSG00000015852, Defb29, 4930525K10Rik, Defb19, OTTMUSG00000015859, Defb36, OTTMUSG00000015862, Rem1, H13, Mcts2, Id1, LOC629170, Cox4i2, Bcl2l1, Tpx2, Mylk2, Fkhl18, Dusp15, Ttll9, Pdrg1, Xkr7, BC020535, Hck, Tm9sf4, Tspyl3
Downstream gene8430427H17Rik, Commd7, 7530422B04Rik, Dnmt3b, LOC668932, Mapre1, EG329541, LOC100043869, Spag4l, Bpil1, Bpil3, Rya3, LOC100043870, Gm1006, EG545477, Psp, LOC100043652, 1700058C13Rik, Plunc, 2310021H06Rik, U46068, BC018465, 5430413K10Rik, OTTMUSG00000015915, Cdk5rap1, Snta1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-273P03.T7 (MSMg01no273_p03.b1)MSMg01-273P03.TJ (MSMg01no273_p03.g1)
ACCAG412813AG412814
length732777
length of high quality
(start - end)
584 (41 - 624)195 (123 - 317)
definitionCHROMAT_FILE: MSMg01no273_p03.b1 PHD_FILE: MSMg01no273_p03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:13:25 2005CHROMAT_FILE: MSMg01no273_p03.g1 PHD_FILE: MSMg01no273_p03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:13:25 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(153,230,588 - 153,231,166)(153,066,292 - 153,066,485)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
AGATTTTGTTAGGCTTACCTTCTAGGAACTATCTCATGAAGCACTTGGTT
CTGTCAACAGCTGTGTGCATCCTGACAGTATGCAGCAGACGCACTTCTTA
GGAGTGCCTTTAGAATGGCAAGACAGCACCCCAATAGTACTGTGCTAGGA
AATTTTGTGCCAGGCTTTCAAATTAATGTAATGGAAACAAGATTAAGTAC
TGCCCAATTTGGGGTACAAGTAGCAATCTCTAGGTCACGAAGCCCCACCT
TCTCTACAGCTTACAATAGCACCCTAACCTGAGGGAAACTGATATTGCCA
ATGTGTACACAGGTCCCACCCCTTTCAAACAAGGTCCTATTTCATCAAGA
GCGTATTTGATGTCAAACTGACCTTGTGTGTCCCGTGTCCCTTCCTTATT
GGTCTTCTAATCTTAGCACTGCACTCAGTAGCTACAGAATGGGGCTGAAA
ACCAAGTGTCACCTCACAGCCTGCCTGGTACCCCTACCTCAGCACAGCCC
ACAGGCCTGAATCCTGAGCTCCCTCTGGGACAAGGGTGACACAAGGCATC
AGCTACTCCCAAGTTAAAAGTTTCAAGTCTATGGAGCTATTAATCCTGGC
TACCTGAAGTACTTTCTAAGTGGCAAGTGAACCATCACTCCATGTTCATG
CCACTAGCACCCATTTGGACAAGACAGTGGCA
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXACTAGTAAGTCTAAAAAGTCTAATAGGATCT
GGGGTGGGAAGAGCAAGCCCGCACGGTAAAGAATTACGAGCACGTTATTT
GAGTCTCTAAGAGACCCCATGGGGGGAAGAGGTAGGGAGATTCTAAAGGT
CGAAAGAGCGAGTTCTCTGAATTTCAAACGGGTGTAGAAATGGGACCCTC
CCGAAGGAAAATGCCTAAACTTTCCACAGTATGATCACTGGGAAGGGAAC
TGCAGCTAGGGCTTTAGTTTGTGTTCTGCGGCCCGAGGGACTGCAGAAAA
GCCTGAATTTTTTTTTGTGACCCCCCCCGCCCGCGAAAGAGCTTATAGCA
GACTATTCGGAGCCCGTAATGGAAGGATATGTGTATCGGTGTAGGCCGGT
CCGACGCTGTAAACAGGTGCAGCTTATCTATGCCCCCCAGACCGCGATTT
CGAGGAAGGGTAAGTGCGTGTTATTTGGGCGTCCCTGGGAGTTTGTTGAG
GTTCATATTTATCGAACCCTTCGTGCCGACTTTGCCTGTTTTATGGAACG
CTCGGTATCCTCGGATTTCTTTGTTCACGGTTTCTTTTAGTGACAATATT
GTTTTTTTTCGTCGGAAGAGAACTTTACTATTTATCTCTTTTCGATCTGT
CGTTGTCATTCTTCTTCTGTCTTTTGAGGGCCTTTCTCTTCTTTCTGTGT
TGGTGTTTGTACTCCCGGTCCCCCCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no273_p03.b1 MSMg01no273_p03.b1 CHROMAT_FILE:
MSMg01no273_p03.b1 PHD_FILE: MSMg01no273_p03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:13:25 2005
         (584 letters)



>mm_chr2_153230384_153231367
          Length = 984

 Score = 1073 bits (555), Expect = 0.0
 Identities = 573/579 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcagattttgttaggcttaccttctaggaactatctcatgaagcacttggttctgt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 783 gaattcagattttgttaggcttaccttctaggaactatctcatgaagcacttggttctgt 724

                                                                       
Query: 65  caacagctgtgtgcatcctgacagtatgcagcagacgcacttcttaggagtgcctttaga 124
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 723 caacagctgtgcgcatcctgacagtatgcagcagacgcacttcttaggagtgcctttaga 664

                                                                       
Query: 125 atggcaagacagcaccccaatagtactgtgctaggaaattttgtgccaggctttcaaatt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663 atggcaagacagcaccccaatagtactgtgctaggaaattttgtgccaggctttcaaatt 604

                                                                       
Query: 185 aatgtaatggaaacaagattaagtactgcccaatttggggtacaagtagcaatctctagg 244
           ||||||||||  ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 aatgtaatggggacaagcttaagtactgcccaatttggggtacaagtagcaatctctagg 544

                                                                       
Query: 245 tcacgaagccccaccttctctacagcttacaatagcaccctaacctgagggaaactgata 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 tcacgaagccccaccttctctacagcttacaatagcaccctaacctgagggaaactgata 484

                                                                       
Query: 305 ttgccaatgtgtacacaggtcccacccctttcaaacaaggtcctatttcatcaagagcgt 364
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 ttgccaatgtgtacacaggccccacccctttcaaacaaggtcctatttcatcaagagcgt 424

                                                                       
Query: 365 atttgatgtcaaactgaccttgtgtgtcccgtgtcccttccttattggtcttctaatctt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 atttgatgtcaaactgaccttgtgtgtcccgtgtcccttccttattggtcttctaatctt 364

                                                                       
Query: 425 agcactgcactcagtagctacagaatggggctgaaaaccaagtgtcacctcacagcctgc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 agcactgcactcagtagctacagaatggggctgaaaaccaagtgtcacctcacagcctgc 304

                                                                       
Query: 485 ctggtacccctacctcagcacagcccacaggcctgaatcctgagctccctctgggacaag 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 ctggtacccctacctcagcacagcccacaggcctgaatcctgagctccctctgggacaag 244

                                                  
Query: 545 ggtgacacaaggcatcagctactcccaagttaaaagttt 583
            ||||||||||||||||||||||||||||||||||||||
Sbjct: 243 agtgacacaaggcatcagctactcccaagttaaaagttt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 584
Length of database: 984
Length adjustment: 10
Effective length of query: 574
Effective length of database: 974
Effective search space:   559076
Effective search space used:   559076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no273_p03.g1 MSMg01no273_p03.g1 CHROMAT_FILE:
MSMg01no273_p03.g1 PHD_FILE: MSMg01no273_p03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:13:25 2005
         (195 letters)



>mm_chr2_153066092_153066686
          Length = 595

 Score =  360 bits (186), Expect = e-104
 Identities = 192/194 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   acggtaaagaattacgagcacgttatttgagtctctaagagaccccatggggggaagagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acggtaaagaattacgagcacgttatttgagtctctaagagaccccatggggggaagagg 260

                                                                       
Query: 61  tagggagattctaaaggtcgaaagagcgagttctctgaatttcaaacgggtgtagaaatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tagggagattctaaaggtcgaaagagcgagttctctgaatttcaaacgggtgtagaaatg 320

                                                                       
Query: 121 ggaccctcccgaaggaaaatgcctaaactttccacagtatgatcactgggaagggaactg 180
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| 
Sbjct: 321 ggaccctcccgaaggaaaatgcctaaactttccacaatatgatcactgggaagggaactt 380

                         
Query: 181 cagctagggcttta 194
           ||||||||||||||
Sbjct: 381 cagctagggcttta 394


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 195
Length of database: 595
Length adjustment: 8
Effective length of query: 187
Effective length of database: 587
Effective search space:   109769
Effective search space used:   109769
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)