Query= MSMg01no274_g20.b1 MSMg01no274_g20.b1 CHROMAT_FILE:
MSMg01no274_g20.b1 PHD_FILE: MSMg01no274_g20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:13:57 2005
(330 letters)
>mm_chr2_123522576_123523305
Length = 730
Score = 499 bits (258), Expect = e-145
Identities = 318/366 (86%), Gaps = 44/366 (12%)
Strand = Plus / Plus
Query: 5 gaattcctgtgcctaccaaagttccatttggtaccttgctttccatgcaggattcatggt 64
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 163 gaattcctgtgccaacaaaagttccatttggtaccttgctttccatgcaggattcatggt 222
Query: 65 ttattaacttcaaacccgaagcttcccaaaaattttaacaaaca---------------- 108
|||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 223 ttattaacttcaaatacgaagcttcccaaaaattttaacaaacatataatattaaaaata 282
Query: 109 --------------------------caaaatgaaaatacaccacaaatttgtgtgatga 142
||||||||||||||||||||||||||||||||||
Sbjct: 283 attttcaaagtgttaaaaatgatagacaaaatgaaaatacaccacaaatttgtgtgatga 342
Query: 143 ttttaaataataaaaacttcagcaacaaaagcacacaatacatttaaggaagtaaagaaa 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 ttttaaataataaaaacttcagcaacaaaagcacacaatacatttaaggaagtaaagaaa 402
Query: 203 tagagacttaaaaactaaggacaagtttgaaatgttacaaaaagagacaaaactcagtag 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 tagagacttaaaaactaaggacaagtttgaaatgttacaaaaagagacaaaactcagtag 462
Query: 263 aggactagactagaactttccatttgttatttccatgggtgagaaattcttttttttt-- 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 aggactagactagaactttccatttgttatttccatgggtgagaaattctttttttttaa 522
Query: 321 tttttt 326
||||||
Sbjct: 523 tttttt 528
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 330
Length of database: 730
Length adjustment: 9
Effective length of query: 321
Effective length of database: 721
Effective search space: 231441
Effective search space used: 231441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no274_g20.g1 MSMg01no274_g20.g1 CHROMAT_FILE:
MSMg01no274_g20.g1 PHD_FILE: MSMg01no274_g20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:13:57 2005
(301 letters)
>mm_chr2_123714651_123715352
Length = 702
Score = 514 bits (266), Expect = e-150
Identities = 290/298 (97%), Gaps = 1/298 (0%)
Strand = Plus / Minus
Query: 3 tctctagcccaggatgacattaaactcaagatactattgccttggtcccctgtgtatggc 62
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 591 tctctagcccaggatgacattaaactcaagatactattgccttggttttctgtgtatggc 532
Query: 63 attattggtgtgcaccaccacttgactggctaaaagctgtgaaatttctgatgctaggtt 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 attattggtgtgcaccaccacttgactggctaaaagctgtgaaatttctgatgctaggtt 472
Query: 123 tatcagtttggcacatgcttttgcaactttggatgtcatcttcaatggatggttatgtgg 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 tatcagtttggcacatgcttttgcaactttggatgtcatcttcaatggatggttatgtgg 412
Query: 183 tcacattactccacaatggagccaagttcatgcaaagaaaatgattttgagattttcagc 242
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 ccacattactctacaatggagccaagttcatgcaaagaaaatgattttgagattttcagc 352
Query: 243 ttctaatcttcatacatttttttt-cttacagtacaattctgtaggtttttttttctg 299
|||||| ||||||||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct: 351 ttctaagcttcatacatttttttttcttacagtacaattctgtaggcttttttttctg 294
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 301
Length of database: 702
Length adjustment: 9
Effective length of query: 292
Effective length of database: 693
Effective search space: 202356
Effective search space used: 202356
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
