Query= MSMg01no274_j20.b1 MSMg01no274_j20.b1 CHROMAT_FILE:
MSMg01no274_j20.b1 PHD_FILE: MSMg01no274_j20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:14:11 2005
(275 letters)
>mm_chr2_117160726_117161398
Length = 673
Score = 507 bits (262), Expect = e-148
Identities = 269/272 (98%), Gaps = 2/272 (0%)
Strand = Plus / Plus
Query: 1 ttctattccagccttccaagagagcagttgctggaagggatggacaactaacacttaatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttctattccagccttccaagagagcagttgctggaagggatggacaactaacacttaatt 260
Query: 61 atgctcaagagacagctttcagtatacacgtctcaatgcccatgaggttttaaacagtaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atgctcaagagacagctttcagtatacacgtctcaatgcccatgaggttttaaacagtaa 320
Query: 121 ctagattgtcccttaggtgtacctgagacatgaataaaacctcagtttccagaaaaatct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctagattgtcccttaggtgtacctgagacatgaataaaacctcagtttccagaaaaatct 380
Query: 181 acctaccgtttgtctcctcaggtcagttgtcttccctctccagtacccaagtcagactct 240
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 381 acctaccgtttgtctcctcaggtcagttgtcttccctctcaagtacccaagtcagactct 440
Query: 241 ctgtgaccacaggcattgtctgcttactcggt 272
||||||||||||||||||||||||||||||
Sbjct: 441 --gtgaccacaggcattgtctgcttactcggt 470
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 275
Length of database: 673
Length adjustment: 9
Effective length of query: 266
Effective length of database: 664
Effective search space: 176624
Effective search space used: 176624
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no274_j20.g1 MSMg01no274_j20.g1 CHROMAT_FILE:
MSMg01no274_j20.g1 PHD_FILE: MSMg01no274_j20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:14:11 2005
(284 letters)
>mm_chr2_117317673_117318361
Length = 689
Score = 501 bits (259), Expect = e-146
Identities = 280/287 (97%), Gaps = 7/287 (2%)
Strand = Plus / Minus
Query: 1 aagtctagcctagacggcatagtgggaaaatattaagaaaccaaccctaaaatctcagac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 aagtctagcctagacggcatagtgggaaaatattaagaaaccaaccctaaaatctcagac 427
Query: 61 tacaattctgcttttccagttcctttataaagtgtttctaaatagatttataaatgacca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 tacaattctgcttttccagttcctttataaagtgtttctaaatagatttataaatgacca 367
Query: 121 actttgtttttctg-catactttctgtttctataaatactcgagcatggctcctaattaa 179
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 actttgtttttctgtcatactttctgtttctataaatactcgagcatggctcctaattaa 307
Query: 180 gttcttgtgt-gactgtgttaagtctgtcgggtttngga-gcttctgaaatgccctgtgg 237
|||||||||| |||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct: 306 gttcttgtgtggactgtgttaagtctgtcgggttt-ggaggcttctgaaatgccctgtgg 248
Query: 238 ttttgtcctttcattt-aggaaatacttttcc-ag-tctcctctctg 281
|||||||||||||||| ||||||||||||||| || |||||||||||
Sbjct: 247 ttttgtcctttcatttcaggaaatacttttccaagttctcctctctg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 689
Length adjustment: 9
Effective length of query: 275
Effective length of database: 680
Effective search space: 187000
Effective search space used: 187000
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
