BAC Information

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BAC

Clone NameMSMg01-274N06
Chromosome2 (Build37)
Map Location 96,320,966 - 96,321,252
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042843
Downstream geneLOC100043267, Lrrc4c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-274N06.T7 (MSMg01no274_n06.b1)MSMg01-274N06.TJ (MSMg01no274_n06.g1)
ACCAG413448AG413449
length729728
length of high quality
(start - end)
279 (41 - 319)287 (71 - 357)
definitionCHROMAT_FILE: MSMg01no274_n06.b1 PHD_FILE: MSMg01no274_n06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:14:26 2005CHROMAT_FILE: MSMg01no274_n06.g1 PHD_FILE: MSMg01no274_n06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:14:27 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
ACACAGAAGCCCCTACAACCATGGTAGAAGCAGCCCTGAGAGCATCTTGA
GAGTGCAGGTGTCCTTACCATCATCACATACATGGCCTTTGAGAAGTTCA
AAAACACAATTGTAATGGAACTATGAAAGTGTACATGAATGTTCTAGGAA
GTGACTCAGCTCAGTCGTTGTGGCAGGATGACATTCTATGTAAGGAAGCC
AGAGAAAGACATAGAATGAAGATGTGAATGAATGTATAACCTAATAGGCA
TAACAAAGACTTCTACATCTTTTTTCAGGAAGACTGCGGTATTGTCTAGT
AGCAGATTTNGATGCCTCGGGAACAGNGCCCTAATAGAGGTNTGTGTATC
GTGAAGATGTCATAACTGAAAAAAAAAAGATACTATGGTGGATTGGTATT
CAGGTGATGCCACCAAGAGTTTCAGATCCTGAACCCGATTTGAGGTGTGC
ACTATGCTTTCTTGGGTTTCAGTCCCAATTTGGCCCAATTTATTACCTGT
TATACTCACATTCCTTCCTTTTGGAATAAGAATGTTAGCTTTGTGCCATT
GTGTATTACAAATATATCTAGTTTTATGATTCTATATGGGCTCATGGTAA
AAAGTTTGTCCTGATTCTCAGAGGAAACTTTTTTGTTTCTTAACAGTATT
GCCATTCTTATAGACTATTGGATCTGTTT
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCATTTCCATAAACACCAAGTAGGATTTTGT
AAGTCTTGTTACAAGTCTTGATAACAGTGAGTCATTAAACCCCTTTTTGT
CAAACTGATGTGTCTTGGAAAACCCAAAAAATGTAAGAGAAAAATCATGT
AGGTGGAAGCAAATGAATTTTGCACTTAAATTGCTTTTCAAATTCCTTTT
TATAAATGGTACCTACACCTTAAAGGAACTGCAAAAGATAATTCATTCTT
TTTTATTTATTTATTTTAATTGGATATTTTATTTATTTACATTCAAATGT
TATTCCGTTTTCTCTTTTTCCNNTCTNACCCCCCCCTATCACATAACTTT
TCTCCCTGCTTCTGTGAAGATGATTAAAACTCACCCACTCATCCGCTACC
GCCTCCCTGTCCTCGCATTCCCCTACACTGGTTCATTGGGCCTTCACAGG
ACCAATGGCTTCTTCTCCCATTGATGCCAGACAAAGCCATCCTCTGCTAC
ATATACTGCTGCTTCCACGGCTGCTCCAATGTGTACTCCTTGCTTGGATG
TTTAGTCTCTGTCAACTCCGGTTGTTCTAGCGGCTTGAGACTGTTGTTCT
TCCTATGGAGTTTGAAACCTTTCATCTCTTCAGTCCTTTTTCCAGATCCT
CCTTTGCGGATCCTGTGTTTATGTCAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no274_n06.g1 MSMg01no274_n06.g1 CHROMAT_FILE:
MSMg01no274_n06.g1 PHD_FILE: MSMg01no274_n06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:14:27 2005
         (287 letters)



>mm_chr2_96320810_96321496
          Length = 687

 Score =  555 bits (287), Expect = e-162
 Identities = 287/287 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   catttccataaacaccaagtaggattttgtaagtcttgttacaagtcttgataacagtga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 catttccataaacaccaagtaggattttgtaagtcttgttacaagtcttgataacagtga 384

                                                                       
Query: 61  gtcattaaacccctttttgtcaaactgatgtgtcttggaaaacccaaaaaatgtaagaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 gtcattaaacccctttttgtcaaactgatgtgtcttggaaaacccaaaaaatgtaagaga 324

                                                                       
Query: 121 aaaatcatgtaggtggaagcaaatgaattttgcacttaaattgcttttcaaattcctttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 aaaatcatgtaggtggaagcaaatgaattttgcacttaaattgcttttcaaattcctttt 264

                                                                       
Query: 181 tataaatggtacctacaccttaaaggaactgcaaaagataattcattcttttttatttat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 tataaatggtacctacaccttaaaggaactgcaaaagataattcattcttttttatttat 204

                                                          
Query: 241 ttattttaattggatattttatttatttacattcaaatgttattccg 287
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 ttattttaattggatattttatttatttacattcaaatgttattccg 157


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)