Query= MSMg01no274_n14.b1 MSMg01no274_n14.b1 CHROMAT_FILE:
MSMg01no274_n14.b1 PHD_FILE: MSMg01no274_n14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:14:28 2005
(319 letters)
>mm_chr2_89233573_89234290
Length = 718
Score = 572 bits (296), Expect = e-168
Identities = 308/312 (98%), Gaps = 1/312 (0%)
Strand = Plus / Minus
Query: 5 gaattctctaggggatttgatgttatcattggttataaaacaaaaagtcaataacttggt 64
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 gaattctcttggggatttgatgttatcattggttataaaacaaaaagtcaataacttggt 456
Query: 65 acagataaaccagactaatgctgttttgtgagtgatcgataatataaaacagagtctgta 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 acagataaaccagactaatgctgttttgtgagtgatcgataatataaaacagagtctgta 396
Query: 125 ttttgtgattatcctgtactgtgtacaactcaaaaacatgctaagaggattatttggtta 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 ttttgtgattatcctgtactgtgtacaactcaaaaacatgctaagaggattatttggtta 336
Query: 185 agctaacagtacacatatgagtaaaattggaacagaatcttaatgcatgttcccaaaaca 244
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 atctaacagtacacatatgagtaaaattggaacagaatcttaatgcatgttcccaaaaca 276
Query: 245 gcttcaaatttcataattcatcttatataccaatagttattttttttctgtatttccatt 304
||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||
Sbjct: 275 gcttcaaatttcataattcatcttatataccaacagttattttttt-ctgtatttccatt 217
Query: 305 gtgcataatctg 316
||||||||||||
Sbjct: 216 gtgcataatctg 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 718
Length adjustment: 9
Effective length of query: 310
Effective length of database: 709
Effective search space: 219790
Effective search space used: 219790
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no274_n14.g1 MSMg01no274_n14.g1 CHROMAT_FILE:
MSMg01no274_n14.g1 PHD_FILE: MSMg01no274_n14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:14:28 2005
(290 letters)
>mm_chr2_89018676_89019365
Length = 690
Score = 545 bits (282), Expect = e-160
Identities = 288/290 (99%)
Strand = Plus / Plus
Query: 1 tcagaagaagtcaggcccatcaaggtgcaaaggaagtcagacattgaaactgaggagaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcagaagaagtcaggcccatcaaggtgcaaaggaagtcagacattgaaactgaggagaga 260
Query: 61 taatcagccacatggcagacatacaatagtatgaacacattaactgagttatgagttacc 120
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 261 taatcagccacatggcagacatagaatagtatgaacacattaactgagttatgagttacc 320
Query: 121 tggtgaacaaccctcagctttagttcataaataagcctccatgtcactatttggaaacat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tggtgaacaaccctcagctttagttcataaataagcctccatgtcactatttggaaacat 380
Query: 181 agaatgctacttgcaattgcttgagtgcctaactctttcccagagttcctaactctgcat 240
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aggatgctacttgcaattgcttgagtgcctaactctttcccagagttcctaactctgcat 440
Query: 241 gtcctgcctactctctcctgtttcactatgggtctttcagatgctctcac 290
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtcctgcctactctctcctgtttcactatgggtctttcagatgctctcac 490
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space: 191361
Effective search space used: 191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
