BAC Information

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BAC

Clone NameMSMg01-275A18
Chromosome2 (Build37)
Map Location 108,478,810 - 108,574,223
singlet/doubletdoublet
Overlap geneLOC623003
Upstream geneLOC100043078, LOC668790
Downstream geneLOC100043423, LOC623031, Mett5d1, Kif18a, Bdnf
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-275A18.T7 (MSMg01no275_a18.b1)MSMg01-275A18.TJ (MSMg01no275_a18.g1)
ACCAG413604AG413605
length745753
length of high quality
(start - end)		318 (41 - 358)287 (70 - 356)
definitionCHROMAT_FILE: MSMg01no275_a18.b1 PHD_FILE: MSMg01no275_a18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:14:42 2005CHROMAT_FILE: MSMg01no275_a18.g1 PHD_FILE: MSMg01no275_a18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:14:43 2005
singlet/doubletdoubletdoublet
BLAST hitpluralunique
Map location.(108,573,910 - 108,574,223)(108,478,810 - 108,479,096)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
AGGAGAGCATGATTTCAGGGCTGCCTTTGATGGTGATGGGGATCAGAACA
TGATTCTGGGCATGCATGGCTTCTTTGTGAACCCTTCTGACTCTGTGGCT
GTCATCGCTGCCAACATCTTCAGCATTCCATATTTCCATCAGATCGGGAT
CCGTGACTTTGCATGAAGCATTCCCACAAGTGGTGCTCTGAACTGGGTAG
CAAATGCCACAAAGATTGCTTTGGGTGAGACCCCCAACTAGCTGGGCACT
TTTGGGGAATTTGATGGATGTAAGCAAGCTGTCCATCTGTGGAGAGGAGT
ACTTTGGAACTAGTTCAGACCACATCTGAGAGAAAGATGGACTGTGGGCT
TTCCTAGCACGGCTCTACATTTTGGCCATCCACAAACAGAGCCTGGAGGA
TATCCTCAAAGACCACTGGTAGAAGCTTGGTTGGAACTTCTTTACCAGGT
ATGACCACGAGGAGGTGGAAACTGAGGGTGCAAGCACAATGATAAAGGAC
CTGTAGGCTCTGATGCTGGACCACTCCTTTGTGGGGAAGCAGTTCTCAGC
AAAAGATAAACTCTACCTGTGGAGAAAGCTGATAACTTTGAATAGAGTGA
CTCAGTAGATGGAAGCATTTCAAAAGACCGAGGCTTGCAGCTTACTTTTG
CAGATGGTTCTTGTATCATCTTCGGACTGAGTGGCACTGGGCGTC

CTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTAAGTAGAAGAATCAGAATAGGGACAGACAC
AGTTAAAGCCTCAGAGACATAGACAGTTGTGAAATATTAAAGCCACCTAA
AAGGTGGGAACTACACAAAAAGGAGTAAAATGGCCCATAAGAGCAGGCTG
AGAGACTACATGTAAACAAACAACAGTCTGCAGAGACAGCTTAGTTGGAA
AAAAACGAGTATAGAACAATCATGAGTACTAAGTTCTTCCCATGGAACCT
ACTCTATAAAAATGAAAAAGAAAGGCAGGTAGAGCAGAGAAGGGAAGGGA
GGGGAAAGTAAAGGAAAGGACAGGAAAGGAAAGGAAAGGAAAGGAAAGGA
AAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGA
AAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGA
AAGGAAAGGAAAGGAAAGAAATGGAAGGGAAATGAAGGGGAGGGGAGGGA
AGGGAAGGGAAAACGTATAAGTTAACTAATCACAGCATTGTATCCTCTAA
TACCAGTCCTGATAAAGTGGAAATAAGACGATCCCTTAGGTTTGCTACGA
ATTTAATCTCGACAGATATGCTAGGTCCAGTGTCAATGATATATTCTGTC
TCACAATTAAGGTGAATTTGATTGACAGACTCATCACAACCCTTTCAGAC
TTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no275_a18.b1 MSMg01no275_a18.b1 CHROMAT_FILE:
MSMg01no275_a18.b1 PHD_FILE: MSMg01no275_a18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:14:42 2005
         (318 letters)



>mm_chr2_108573706_108574423
          Length = 718

 Score =  576 bits (298), Expect = e-169
 Identities = 310/314 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaggagagcatgatttcagggctgcctttgatggtgatggggatcagaacatgat 64
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 518 gaattcaggagagcatgatttcaggactgcctttgatggtgatggggatcagaacatgat 459

                                                                       
Query: 65  tctgggcatgcatggcttctttgtgaacccttctgactctgtggctgtcatcgctgccaa 124
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 tctgggcatgcatgggttctttgtgaacccttctgactctgtggctgtcatcgctgccaa 399

                                                                       
Query: 125 catcttcagcattccatatttccatcagatcgggatccgtgactttgcatgaagcattcc 184
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 398 catcttcagcattccatatttccatcagatcgggatctgtgactttgcatgaagcattcc 339

                                                                       
Query: 185 cacaagtggtgctctgaactgggtagcaaatgccacaaagattgctttgggtgagacccc 244
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 338 cacaagtggtgctctgaactgggtagcaaatgccacaaaaattgctttgggtgagacccc 279

                                                                       
Query: 245 caactagctgggcacttttggggaatttgatggatgtaagcaagctgtccatctgtggag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 caactagctgggcacttttggggaatttgatggatgtaagcaagctgtccatctgtggag 219

                         
Query: 305 aggagtactttgga 318
           ||||||||||||||
Sbjct: 218 aggagtactttgga 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 718
Length adjustment: 9
Effective length of query: 309
Effective length of database: 709
Effective search space:   219081
Effective search space used:   219081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no275_a18.g1 MSMg01no275_a18.g1 CHROMAT_FILE:
MSMg01no275_a18.g1 PHD_FILE: MSMg01no275_a18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:14:43 2005
         (287 letters)



>mm_chr2_108478610_108479296
          Length = 687

 Score =  532 bits (275), Expect = e-155
 Identities = 284/287 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   taagtagaagaatcagaatagggacagacacagttaaagcctcagagacatagacagttg 60
           |||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct: 201 taagtagaagaatcagaagagggacagatacagttaaagcctcagagacatagacagttg 260

                                                                       
Query: 61  tgaaatattaaagccacctaaaaggtgggaactacacaaaaaggagtaaaatggcccata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgaaatattaaagccacctaaaaggtgggaactacacaaaaaggagtaaaatggcccata 320

                                                                       
Query: 121 agagcaggctgagagactacatgtaaacaaacaacagtctgcagagacagcttagttgga 180
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agagcaggctgagagactgcatgtaaacaaacaacagtctgcagagacagcttagttgga 380

                                                                       
Query: 181 aaaaaacgagtatagaacaatcatgagtactaagttcttcccatggaacctactctataa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaaaaacgagtatagaacaatcatgagtactaagttcttcccatggaacctactctataa 440

                                                          
Query: 241 aaatgaaaaagaaaggcaggtagagcagagaagggaagggaggggaa 287
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaatgaaaaagaaaggcaggtagagcagagaagggaagggaggggaa 487


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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