BAC Information

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BAC

Clone NameMSMg01-275L03
Chromosome2 (Build37)
Map Location 45,920,066 - 45,920,346
singlet/doubletsinglet
Overlap genenone
Upstream geneZeb2, LOC100042661, LOC100041337, LOC666604
Downstream geneLOC383690
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-275L03.T7 (MSMg01no275_l03.b1)MSMg01-275L03.TJ (MSMg01no275_l03.g1)
ACCAG414073AG414074
length764761
length of high quality
(start - end)
291 (70 - 360)235 (124 - 358)
definitionCHROMAT_FILE: MSMg01no275_l03.b1 PHD_FILE: MSMg01no275_l03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:15:28 2005CHROMAT_FILE: MSMg01no275_l03.g1 PHD_FILE: MSMg01no275_l03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:15:28 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTGTGTATATCCCACAGCGGTCCTACTTTTACCCACCTGGGTTATTCA
GTGTGGGACTCCTGTTCCTGCTCCCATTTCCACAGTCTACAGTGGATTCG
TTAACAGGATGAAGCGACTCGGAGGATGGACAGAGGGCATAACTGTAGAA
GCACAGATCTTTACAGTCAAGCACATAAAATGGAGCACGGGATTTCTCCG
GAGACTTTGTTGCTTTCTAGCCACAAAAGGATCCGCAAAAGCCAGAATGC
ACAACAGTACTGCTGGTTAACCAGTACTTGCTGATGCTCGCAAGGTCCAT
GTGCTGTTCGCAGTAATACGCTCACAAGGCTGATTACCTTATGAGCTGCA
AAAATAGGTTTTAAGTGTAAAATCTTTTGGTTTGGCCTTAGAGAGTTTCA
TTGTAGCAGAACATTTGACTGTGCACTCAAATATAATTACTCTTCAACTT
ACATATAATAAGCAAGAAGGGCACTCCTATAATAAAGGGTAGTTATAAAG
AAGAGACCCGTATTTTCAAAGAGTCCATTTTGATCCATGATCGTAACTCA
TTATGATATTATGAATATGCCGTACAATTAAAGAAAGTGCTAATTTGAAG
GAAACCAAAACCACATCTTCAAAATCTTGAACCAATGCCACACACAGGGC
AGACCTTGCTGCCTATTCCTGCTTCCTTTGCTATGAGAATCCAGGAGGTA
AGTCCGGTCTGCCA
ATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGTTCCCCATTCTTA
ATAGGGTTATTCGATTCTTCGGAGTCTAACTTCTCGAATTCTTTGTATAT
ATTGGATATTAGCCCTCTATTGGATGTAGGATTGGTAAAGATCTTTTCCT
GATCTGTTGGTTACCCTTTAGTCCTATTGACAGTATTCTTTGCCTTACAG
AAGCTTTGCAATTTTATGAGTTCCCATTTGTCAATTATTGATCATAGAGC
ATAAGCCATTGGTGTGCTCAGCAAATTTTCCCCTGTGCCCATGTGTTTGA
GGCTCTTCTTTTTTTCTCTCCCACCACCTTCAGTGTATCTGGTTTTATAT
AGAGATCCTTGAGACACTTGAACTAGAACTTTGTAGAAGGAGAAAAAGAA
TGGGTTGGTTTGCATTCTTCTACATGCTGACCTCCAATTGAACTGGTACC
ATTTGTTGAGATTCATTTTTTTTCTATTGGATGGTTTTAGCTCCTTTGTC
AAAGATCAACTGACTATAGTTGTGTGGGATCACTTTTGGGTCTTTAATTC
TATTCCATTCATCTTCCTGCCTGACTCTGTACCAATACCATATAATTTTT
AATCATTTGCACTCTATAATATAGCCTGAGGTCAGGGATGGTAATTCCCT
CAGAAGTTCTTTAATTGTTGAGAATAGTTTTTGCTATCCTAGGTCTTTTC
TGTTATTCCAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no275_l03.b1 MSMg01no275_l03.b1 CHROMAT_FILE:
MSMg01no275_l03.b1 PHD_FILE: MSMg01no275_l03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:15:28 2005
         (291 letters)



>mm_chr2_45919859_45920546
          Length = 688

 Score =  441 bits (228), Expect = e-128
 Identities = 269/284 (94%), Gaps = 3/284 (1%)
 Strand = Plus / Plus

                                                                       
Query: 8   acttttacccacctgggttattcagtgtgggactcctgttcctgctcccatttccacagt 67
           |||||||||||||||| |||||||||||||||||||||  ||||||||||||||||||||
Sbjct: 208 acttttacccacctggcttattcagtgtgggactcctggccctgctcccatttccacagt 267

                                                                       
Query: 68  ctacagtggattcgttaacaggatgaagcgactcggaggatggacagagggcataactgt 127
           |||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 268 ctacagtggatttgttaacaggatgaagcgacttggaggatggacagagggcataactgt 327

                                                                       
Query: 128 agaagcacagatctttacagtcaagcacataaaatggagcacgggatttctccggagact 187
            |||||   |||||||||||||||||||||||||  || |||||||||||||| ||||||
Sbjct: 328 ggaagc---gatctttacagtcaagcacataaaaaagatcacgggatttctcccgagact 384

                                                                       
Query: 188 ttgttgctttctagccacaaaaggatccgcaaaagccagaatgcacaacagtactgctgg 247
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 385 ttgttgctttctagccacaaaaggatccgcaaaagccagaatgcgcaacagtactgctgg 444

                                                       
Query: 248 ttaaccagtacttgctgatgctcgcaaggtccatgtgctgttcg 291
           ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 445 ttaaccaatacttgctgatgctcgcaaggtccatgtgctgttcg 488


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 688
Length adjustment: 9
Effective length of query: 282
Effective length of database: 679
Effective search space:   191478
Effective search space used:   191478
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)