BAC Information

Click to search

BAC

Clone NameMSMg01-275L11
Chromosome2 (Build37)
Map Location 171,721,688 - 171,721,917
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668955, LOC100043743
Downstream geneLOC100043744, Cbln4, Mc3r, 2010011I20Rik, Aurka, Cstf1, F730031O20Rik, 2410001C21Rik, A330041C17Rik, 1700029J11Rik, LOC629957, Tcfap2c, LOC100043750, Bmp7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-275L11.T7 (MSMg01no275_l11.b1)MSMg01-275L11.TJ (MSMg01no275_l11.g1)
ACCAG414089AG414090
length751757
length of high quality
(start - end)
288 (374 - 661)230 (124 - 353)
definitionCHROMAT_FILE: MSMg01no275_l11.b1 PHD_FILE: MSMg01no275_l11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:15:30 2005CHROMAT_FILE: MSMg01no275_l11.g1 PHD_FILE: MSMg01no275_l11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:15:30 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCAATAGTTCTCCAGAAAATAGGCCAGGCTTTCAGTGCCAAACCGGGAC
TGCTGAAACCAACCTCCTGCCAATGAACTGCTACCAGGTTCTCAGTCCAG
GGGGAGGCAAACACTGCTGGACCACATCCTGTAAGCCAGGCTCACAAGTC
CCCTTACCATGTATCAGGCCTGTTCCCGAGAAGCCTGGCCAATACAACAA
CAAATATAAGCTTAAGGAACCCCCGCTTTCCTAACATGTACATCTTCAAG
GAAACAGACGTGTGGTACCGTGATAGGCAGCCTATTTTGGTTGAGTGGGA
CTTGCTCCTGTGACCCACTACAGAAATCTACAAGGGATGGAAAGGCAAGC
CACGTTCCCAGAATCAAGTTCCTGTCCATAATTCTGTGACTCCATCATGC
AGACAATGTCCCAAGCTTCTGGTATTCCTGCTAGACTCCATCCCCACAGT
TATTACCTGGCAACAGCAAGATAGCTCAGCTTGGCCCCTCCTCCCTGTCT
TTAAGCTCTCACCTTTCTTACTCCCTTCTCTCTCTCCCTTCCCCCCTCTC
TCCATGTGGNCATGGCTGATCTCTCTTTCTTCCTTTTCTCTTTCTCCCTG
CCTTTCTACAATAAAGCTCTAAAACCATAGACTGTCTCTGCTCATCAAGG
CCCGCCATACTTGAACGATGGGATAGGCTTTCTCCTAATGAGTCGCCTCT
A
CATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCAGATGTGTGTGTGTGTGTGTGTGTG
TGTGTGTATGTGTTTGTGCGTATGTCAGTAAATTACTAGCAGTTCATGAA
AGGCTAAGTTTCCTTCTGATAGCCTGGTCACGACACAGGAACAGCACTTC
AAGGCATGTTTTAAAATGATGGAAGCCCTGAATTAAGAGCTCTAGTGAAG
CCTGGAAGTTCAATTGGAAATCTCTAGACAAGTAACAAGATCGTCCTAAT
TACATCTAAGTAACCCATCGATACATCTTAAATCTTATATAGGAATAATT
AATATTATGATTTTACCCCCCCCCACTGAAACCAACGTGCCAGATATGTA
GTAACCTGCATTGTTACAACATAAAAAAACAGCAAAGCTGACAAGGTAGG
TCTCCTCATATTTTACTTGGGGTTTTGAAGGAATCCACCCAAGGAGCACA
TCTGGGATCAGAAGCCGTATGTTAGTGACCCTGGTTCTGCCCTTGGCCTC
CCAACACTCCTTCCTTAAGTCCCTTTATTGTTTAGCCATGCTATTATTTG
AGAGCTTATCTACAGTGACATTTCCTTTGCTTTAAAGCTTATTTTACGTG
TGTACATACATGCTTAAGTGTATATAGGGTACCATGAGAACACTGGATTC
CTTTAGGGGGTCCTAGTTACAGGCAACTGATGAGATGTGGATGCCGCAAT
CCATTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no275_l11.g1 MSMg01no275_l11.g1 CHROMAT_FILE:
MSMg01no275_l11.g1 PHD_FILE: MSMg01no275_l11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:15:30 2005
         (230 letters)



>mm_chr2_171721488_171722117
          Length = 630

 Score =  437 bits (226), Expect = e-127
 Identities = 229/230 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gtcagtaaattactagcagttcatgaaaggctaagtttccttctgatagcctggtcacga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 gtcagtaaattactagcagttcatgaaaggctaagtttccttctgatagcctggtcacga 371

                                                                       
Query: 61  cacaggaacagcacttcaaggcatgttttaaaatgatggaagccctgaattaagagctct 120
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 cacaggaacagcacttctaggcatgttttaaaatgatggaagccctgaattaagagctct 311

                                                                       
Query: 121 agtgaagcctggaagttcaattggaaatctctagacaagtaacaagatcgtcctaattac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 agtgaagcctggaagttcaattggaaatctctagacaagtaacaagatcgtcctaattac 251

                                                             
Query: 181 atctaagtaacccatcgatacatcttaaatcttatataggaataattaat 230
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 atctaagtaacccatcgatacatcttaaatcttatataggaataattaat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 230
Length of database: 630
Length adjustment: 9
Effective length of query: 221
Effective length of database: 621
Effective search space:   137241
Effective search space used:   137241
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)