BAC Information

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BAC

Clone NameMSMg01-275L24
Chromosome2 (Build37)
Map Location 168,957,536 - 168,957,833
singlet/doubletsinglet
Overlap genenone
Upstream geneAdnp, Dpm1, Mocs3, LOC100043908, Kcng1, LOC668952, Nfatc2, Atp9a, Sall4, Zfp64, LOC100043909
Downstream geneEG668954, Tshz2, LOC100043737, LOC100043910, Zfp217
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-275L24.T7 (MSMg01no275_l24.b1)MSMg01-275L24.TJ (MSMg01no275_l24.g1)
ACCAG414114AG414115
length734732
length of high quality
(start - end)
298 (437 - 734)295 (438 - 732)
definitionCHROMAT_FILE: MSMg01no275_l24.b1 PHD_FILE: MSMg01no275_l24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:15:32 2005CHROMAT_FILE: MSMg01no275_l24.g1 PHD_FILE: MSMg01no275_l24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:15:32 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ACTATTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCATAACTTACTTTAAAATAGTCTAGTTGGCCTTGCAATGTGTC
GCTCAGATGACTGGTGTGTGTTTTGCTCTGCCTGGGTGGATTCGGGCAGT
CTGTATCCTTATGCTGCTAGCTTATTTAATTTAGCCCTGGAGGTTCATCT
ACAGTGTAGCATGGGGCAGGTTTGAGGTTAAAAATTATTTCACCACCAGA
TGGTGGTGGCGCGCCCCTTTAATCCCAGCACTCAGGGGACAGAGGCAGGC
AGATCTCTTTGAGTTTGGGGACAGCCTGGTCTACACAGCAAGTTCTGACA
CAGCCAGGGCTACACTGAATAATCCCCCCCGCCCAATGAAGCAGCAACAA
CAAAAAAGGAAATTATTCGTTGTATAAAAAGAAATTTCTACGTCCACTCA
TTATCAATAGACACAGGTTGCTCTTAATTCTTGCTCACTGTATTATATAA
TATATTACATATTACATTGTGTAATATAGTAATGCCAGAACTACACAAAT
TGCTCTTTAAGATTCAGCTTTGAATTTGTTTAAGAATATACTTTGAAAGT
GAGCTTCTGGGTCATAGAGTAGTGTGATTTCAGATGTACAACAGGGCATC
AAAAATATCCTTGTAAGGGCTAGGGTAATGGCTCATTGGTAAAACACTTA
TCATGGATGGCTTCCATCCATGTCTTAAATACAC
NCCTCGATGCAGTGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTTCCCAGCACCCAGGTAGGA
AGGGTTGCAACCGCCGGGAATTCCAGCTCCGAGGAATCTGATGACCCTTT
TTGGCTTTTGTGGGCGCCCCCCCCCCAGCCACATGCACATATACATACAC
ATATAAGTAAAAATGAATGATACAATTTGCAAAACACATGCAACTCAAGT
AGAACGAAGACCAAAGTGGAGACACTTTGCCCCTTTTTAGAATTGGGAAC
CAAACACCCATGGAAGGAATTACAGAGACAAAGTTTGGAGCTGAGACAAA
AGGATGGACCATTNAGTGATTGCCCCCCCCCCCCATCCATCCCATAATCA
GTCTCTAAACGCTGACACCATTGCATACAAAAAAAAGATTTTGCTGAAAG
GACCCTGATATAGCTCTCTCTTGTGAGGCTATGCCAGTGCCTGGCAAACA
CAGAAGTGGATGCTCACAGTCAGCTATTGGATGGATCACAGGGCCCCCAA
TGGAGGAGCTAGAGAAAGTACCCAAGGAGTTAAAGGGGTGTGCAATCCTA
TAGGTAGAACAACAATATGAACTAACCAGTACCCCCAGAGCTCGTGTCTC
TAGCTGCATATGTTTCAGAAGATGGCCTAGTCGGCCATCACTGGGAAGAG
AGGCCCCTTGGTCTTGCAAACTTTATATGCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no275_l24.b1 MSMg01no275_l24.b1 CHROMAT_FILE:
MSMg01no275_l24.b1 PHD_FILE: MSMg01no275_l24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:15:32 2005
         (298 letters)



>mm_chr2_168957336_168958033
          Length = 698

 Score =  569 bits (294), Expect = e-166
 Identities = 297/298 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctacgtccactcattatcaatagacacaggttgctcttaattcttgctcactgtattat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctacgtccactcattatcaatagacacaggttgctcttaattcttgctcactgtattat 260

                                                                       
Query: 61  ataatatattacatattacattgtgtaatatagtaatgccagaactacacaaattgctct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ataatatattacatattacattgtgtaatatagtaatgccagaactacacaaattgctct 320

                                                                       
Query: 121 ttaagattcagctttgaatttgtttaagaatatactttgaaagtgagcttctgggtcata 180
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttaagattcagctttgaattcgtttaagaatatactttgaaagtgagcttctgggtcata 380

                                                                       
Query: 181 gagtagtgtgatttcagatgtacaacagggcatcaaaaatatccttgtaagggctagggt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gagtagtgtgatttcagatgtacaacagggcatcaaaaatatccttgtaagggctagggt 440

                                                                     
Query: 241 aatggctcattggtaaaacacttatcatggatggcttccatccatgtcttaaatacac 298
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aatggctcattggtaaaacacttatcatggatggcttccatccatgtcttaaatacac 498


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 298
Length of database: 698
Length adjustment: 9
Effective length of query: 289
Effective length of database: 689
Effective search space:   199121
Effective search space used:   199121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)