Query= MSMg01no275_n15.b1 MSMg01no275_n15.b1 CHROMAT_FILE:
MSMg01no275_n15.b1 PHD_FILE: MSMg01no275_n15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:15:40 2005
(703 letters)
>mm_chr2_164496085_164497187
Length = 1103
Score = 1299 bits (672), Expect = 0.0
Identities = 693/701 (98%), Gaps = 2/701 (0%)
Strand = Plus / Plus
Query: 5 gaattcgtgaagaagaagtaaagaaggaagggaaacac--aggaggggcattgctgagag 62
|||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 203 gaattcatgaagaagaagtaaagaaggaagggaaacacagaggaggggcattgctgagag 262
Query: 63 gaagagaggaaattacaataaagtataatgcaggaaagcagcataattaagatcactact 122
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 gaagagaggaaattagaataaagtataatgcaggaaagcagcataattaagatcactact 322
Query: 123 ttatattccaacttaaaaaataagcaagaaaaatatctttaacaaaaagatttgagactc 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 ttatattccaacttaaaaaataagcaagaaaaatatctttaacaaaaagatttgagactc 382
Query: 183 tgaaagctctagagagtaatagagaaacattatttcaagatgtaggcacaagcaggtgcc 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 tgaaagctctagagagtaatagagaaacattatttcaagatgtaggcacaagcaggtgcc 442
Query: 243 tggtgcaggtacaggtgagacacaggcaggggtatagtcaggtacaaacagaacaggtgc 302
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 443 tggtgcaggtacaggtgagacacaggcaggggtatagtcaagtacaaacagaacaggtgc 502
Query: 303 agttgcaagcagggcacatgcagacacagctgcaggcacagctgcaggcacaggcagctg 362
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 agttgcaagcagggcacgtgcagacacagctgcaggcacagctgcaggcacaggcagctg 562
Query: 363 caggcacagctgtaggcacaggcagctgcaggcacagctgcaggcacaggcaggagcttt 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 caggcacagctgtaggcacaggcagctgcaggcacagctgcaggcacaggcaggagcttt 622
Query: 423 ctgtaaaaggctctggtatcacaggaaataatttcaagaactgactaatgaaatcaagaa 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 ctgtaaaaggctctggtatcacaggaaataatttcaagaactgactaatgaaatcaagaa 682
Query: 483 cctctgcacaggtgatgagggggaaatcattagggcaaaggggaacctgcagaatgggag 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 cctctgcacaggtgatgagggggaaatcattagggcaaaggggaacctgcagaatgggag 742
Query: 543 gcaagtctttgccaactaaagcatctgacgatggaatggctcctaaaacatcacaatcaa 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 gcaagtctttgccaactaaagcatctgacgatggaatggctcctaaaacatcacaatcaa 802
Query: 603 tagacaattgaatggattgagtggacatttctcanaatcaaaatacacactatctgtaaa 662
|||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||
Sbjct: 803 tagacaattgaatggattgagtggacatttctcaaaatcaaaatatacactatctgtaaa 862
Query: 663 tagttggagaaacgttccacatttgtgtttgttacttttct 703
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 863 tagttggagaaacgttccacatttgtgtttgttacttttct 903
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 44
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 703
Length of database: 1103
Length adjustment: 10
Effective length of query: 693
Effective length of database: 1093
Effective search space: 757449
Effective search space used: 757449
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no275_n15.g1 MSMg01no275_n15.g1 CHROMAT_FILE:
MSMg01no275_n15.g1 PHD_FILE: MSMg01no275_n15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:15:40 2005
(673 letters)
>mm_chr2_164549054_164550125
Length = 1072
Score = 1104 bits (571), Expect = 0.0
Identities = 662/729 (90%), Gaps = 57/729 (7%)
Strand = Plus / Minus
Query: 1 attttggagaccaggctgggcttgaactcagagatctgcctgcccctgcctcttaagggc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1072 attttggagaccaggctgggcttgaactcagagatctgcctgcccctgcctcttaagggc 1013
Query: 61 tcagattagaaggcaccacctcctggctaaa----------------------------- 91
|||||||||||||||||||||||||||||||
Sbjct: 1012 tcagattagaaggcaccacctcctggctaaatttcttcctttctttctttctttctttct 953
Query: 92 ---------------------------tttctttctttctttcttcaagacaagagtttc 124
|||||||||||||||||| ||||||||||||||
Sbjct: 952 ttctttctttctttctttctttctttctttctttctttctttctttaagacaagagtttc 893
Query: 125 tctgtgcagccctggctgtcttgcaattcactctgtagaccaggctggcttcaaactaag 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 892 tctgtgcagccctggctgtcttgcaattcactctgtagaccaggctggcttcaaactaag 833
Query: 185 agattcacttgtctctgcctcctgagtgctgacactaaaagtgtgcaaccctgtgcctgc 244
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 832 agattcacttgtctctgcctcctgagtgctgacactaaaagtgtgcgaccctgtgcctgc 773
Query: 245 tttattccctttccttacaaaagcacaagaatttgatgaagggaactctgctcttctcca 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 772 tttattccctttccttacaaaagcacaagaatttgatgaagggaactctgctcttctcca 713
Query: 305 aatcctattcaccttccaagagcttaagcactgtagtcaaatgaactttcaagtttgtct 364
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 712 aatcctattcaccttccgagagcttaagcactgtagtcaaatgaactttcaagtttgtct 653
Query: 365 taatgggggtaaaacttcagcacgagaggcctttgtggtcatgcaaactattttcaaacc 424
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 652 taatgggggtaaaacttcagcatgagaggcctttgtggtcatgcaaactattttcaaacc 593
Query: 425 acaatagcattatctgcaaattttggcctgggtagcaaacctaggggcatgaggtgttct 484
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 acaatagca-tatctgcaaattttggcctgggtagcaaacctaggggcatgaggtgttct 534
Query: 485 ctcatagacttttgtcatttgacactgtcatagctggtcctgcgttttaactgtaaaggg 544
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 533 ctcatagacttttgtcatttgacattgtcatagctggtcctgcgttttaactgtaaaggg 474
Query: 545 attttactccttacaaatgtaattgttattctcttttatttatttcatgtatatgggtat 604
|||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||
Sbjct: 473 attttactccttacaaatgtaattgttattttcttttgtttatttcatgtatatgggtat 414
Query: 605 actgttgctatcttcagacaccccagaagagggcatcggatcctcattacagatggttgt 664
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 413 actgttgctctcttcagacacaccagaagagggcatcggatcctcattacagatggttgt 354
Query: 665 gagccacca 673
|||| ||||
Sbjct: 353 gagctacca 345
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 673
Length of database: 1072
Length adjustment: 10
Effective length of query: 663
Effective length of database: 1062
Effective search space: 704106
Effective search space used: 704106
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
