BAC Information

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BAC

Clone NameMSMg01-275O09
Chromosome2 (Build37)
Map Location 154,955,444 - 154,956,110
singlet/doubletsinglet
Overlap genenone
Upstream gene1700058C13Rik, Plunc, 2310021H06Rik, U46068, BC018465, 5430413K10Rik, OTTMUSG00000015915, Cdk5rap1, Snta1, Cbfa2t2, Apba2bp, 1700003F12Rik, E2f1, Pxmp4, Zfp341, Chmp4b, LOC668936, LOC435692, Raly, Eif2s2, a, Ahcy
Downstream geneItch, LOC100043877, LOC668931, Dynlrb1, Map1lc3a, Cdc91l1, Trp53inp2, Ncoa6, LOC668938, Ggtl3, Acss2, Gss, Myh7b, Trpc4ap, Edem2, Procr, Mmp24, Itgb4bp, 5530400B04Rik, 2410003P15Rik, Gdf5, Cep250, Ergic3, Fer1l4, Spag4, Cpne1, Rbm12, Nfs1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-275O09.T7 (MSMg01no275_o09.b1)MSMg01-275O09.TJ (MSMg01no275_o09.g1)
ACCAG414226AG414227
length745738
length of high quality
(start - end)		667 (67 - 733)219 (431 - 649)
definitionCHROMAT_FILE: MSMg01no275_o09.b1 PHD_FILE: MSMg01no275_o09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:15:43 2005CHROMAT_FILE: MSMg01no275_o09.g1 PHD_FILE: MSMg01no275_o09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:15:43 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAGAGAATCCGCGGAATT
CCAGGACAGTCACGGCTATACAGAGAAACTCTGTCTCGAAACCCCACCCC
CCAAAAAAGAAAACACTGGACGGTGAGGATGGTGATGGGCAAACCTAGAA
CAAGTAACAAACATATTACCTCTCTCCAAGCTCAACATCATACCAACTTA
CGTGTTTTGTGTTATCTGATGCCCCGAATCCAAGGACATGGAATGGCTGT
ACACATTCCGATATTATATGAAGGTCAGGGTTCTAAATCTAAACTAAGAC
GACTTAACAATTAACACCTTAATCACCTAAGTTGAAATTTTTTCTTGAGA
ATCTAGAATAAGAATTTAGAATACCCAGCAAAGGGAGGGGAATGAAAAGC
AACCCAGCCCAGGGAAACACGCAAGTGCCAAGCCAAGGTTACAAAGTCTT
ACAGTCATCTGAGCCTCAACAACCAAATCACCAATATGAAAGTAGTAGAT
CCTGGAACAGAGATGTGAGGCTCAGCCCAGAAGCGAGGCTAGCCCATCTA
GCCCTCCAAAAAACCAACCAAAGAGAAAATAACCTCGACAAGCAAACAAA
GGAGATTTGCTGCAATATGAACATGGTGAGAACAACAGAGGTCCAGTGAG
CCCCTCGGGTCCAACTTTAGAGCCCTGTCATGAAGATTAGGTTCAAATGG
AGGGCAAAAGGTATACATAACTAAGCACTCATGGTTAAAGTGAGG

TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXTTTCCACAAAAATCTCTCAGAAGCCATGGAGGAATGCTGCACA
CTAGTTTGCTCTCTGTGCCCTGCTCAGTTTGCTTTCTTATACAATCCAGG
GTCCCCTGCTCAAGGGTAGCACTGCCCAGAGTGAGTTGGACCTTCCCATG
TTAATCATTAGTCAAGAATTGCCTTACAGGTTTACCTATAGGCCAACCTG
ACGGTGGTGTTTCCTCAACCGGGGTCCCTCTTTACGCAGACCCCAGGTTG
TGTTAAGCTGAGCTTTAATCAATCGGCACACAGAAGAATCTCATTGTTAC
ATACTTTTTTTTTCTCCTCCCCCCCCACAGTATGAGAGAGTGGTGGAACC
CCCTGTCTGTTGTTTTTTTATCTAACATCTTCGACCCAGGACATTGTAGA
CTTTCCCTTTGTCCTTGTTTTATTTCTTCTGCTGCTCTAATAAAAGATCC
TGACTGCTGTAGGTACTGTTTTATTGCTGTGAAGAGATACCAAGATCAAG
GCAACTCTTATAAAATAAAGCATCTAATTATGGGCTTGATTACAGTTTCA
AAGGGTTGAGTCCATGATTATCATGGCAGGAAGCAGGCAGGCATGGTGCT
GGATCTGTATCTTTGAGCTTTACACCCTGATCCATAGGCAGCAGGGAGAG
ACAGGGTGGGGTGGGGAGAGAGAGAAGACCATGATCGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no275_o09.b1 MSMg01no275_o09.b1 CHROMAT_FILE:
MSMg01no275_o09.b1 PHD_FILE: MSMg01no275_o09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:15:43 2005
         (667 letters)



>mm_chr2_154955244_154956310
          Length = 1067

 Score = 1282 bits (663), Expect = 0.0
 Identities = 666/667 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tatacagagaaactctgtctcgaaaccccaccccccaaaaaagaaaacactggacggtga 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 867 tatacagagaaactctgtctcgaaaccccaccccccaaaaaagaaaacactggagggtga 808

                                                                       
Query: 61  ggatggtgatgggcaaacctagaacaagtaacaaacatattacctctctccaagctcaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 807 ggatggtgatgggcaaacctagaacaagtaacaaacatattacctctctccaagctcaac 748

                                                                       
Query: 121 atcataccaacttacgtgttttgtgttatctgatgccccgaatccaaggacatggaatgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 747 atcataccaacttacgtgttttgtgttatctgatgccccgaatccaaggacatggaatgg 688

                                                                       
Query: 181 ctgtacacattccgatattatatgaaggtcagggttctaaatctaaactaagacgactta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 ctgtacacattccgatattatatgaaggtcagggttctaaatctaaactaagacgactta 628

                                                                       
Query: 241 acaattaacaccttaatcacctaagttgaaattttttcttgagaatctagaataagaatt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 acaattaacaccttaatcacctaagttgaaattttttcttgagaatctagaataagaatt 568

                                                                       
Query: 301 tagaatacccagcaaagggaggggaatgaaaagcaacccagcccagggaaacacgcaagt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 tagaatacccagcaaagggaggggaatgaaaagcaacccagcccagggaaacacgcaagt 508

                                                                       
Query: 361 gccaagccaaggttacaaagtcttacagtcatctgagcctcaacaaccaaatcaccaata 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 gccaagccaaggttacaaagtcttacagtcatctgagcctcaacaaccaaatcaccaata 448

                                                                       
Query: 421 tgaaagtagtagatcctggaacagagatgtgaggctcagcccagaagcgaggctagccca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 tgaaagtagtagatcctggaacagagatgtgaggctcagcccagaagcgaggctagccca 388

                                                                       
Query: 481 tctagccctccaaaaaaccaaccaaagagaaaataacctcgacaagcaaacaaaggagat 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 tctagccctccaaaaaaccaaccaaagagaaaataacctcgacaagcaaacaaaggagat 328

                                                                       
Query: 541 ttgctgcaatatgaacatggtgagaacaacagaggtccagtgagcccctcgggtccaact 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 ttgctgcaatatgaacatggtgagaacaacagaggtccagtgagcccctcgggtccaact 268

                                                                       
Query: 601 ttagagccctgtcatgaagattaggttcaaatggagggcaaaaggtatacataactaagc 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 ttagagccctgtcatgaagattaggttcaaatggagggcaaaaggtatacataactaagc 208

                  
Query: 661 actcatg 667
           |||||||
Sbjct: 207 actcatg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 667
Length of database: 1067
Length adjustment: 10
Effective length of query: 657
Effective length of database: 1057
Effective search space:   694449
Effective search space used:   694449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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