CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAATAATCTTCACTGGCCGCTCATTTTATCCCTAACTTCTCCATTCC
CCCATCCAAGAAGAATGTAACCATAAACAAAGTAGACCCTGGACAGGAAC
ATGAGCTTTTGAGGAAGAGGTGTCCCAACCTTTTGGCACTGTCGTATAAA
GTTTCTATCTACCAAGTTTACACTGGAGAACCACAAGTACAAAAGAAGGG
CAGAAAGTCTCACAATGTGTTAAGTAAGCTCAAGATTTTCTGACAGTATA
TCCTTGTCTGCAGACAAATTTCTCGATAAGTTAGAAAGACTATTTGCCTC
TGGAAATCTACTTTAATATTAATAACAGAAATATTTTCAGATAGATTCTA
TAGTGAAAGATGTAATGCTATTTTAACTAATTTATAATGTTTTGATATGT
CATGCATGACACATGCTGATAAAAACGGTGTGTCATATTTAATACTGCTA
AGTAAAAAGATGCTTAAGCTATGTTGTAAATAAGGCAAGGCCATACTTAA
CAAAATTGTGTACAGAAGGGCTGACTGTGACTTTGCATAACATTTTTCTT
CCAAGTATCTATAGTTTGCTAGAATGTACATAGAAAGGTTTTAGATGTAA
TACTCTGACATACACTCTCAGTTAACCACACTCAAAGATGTGTGGTTTTT
TACTGTTCCCTCATCTTGGAN

CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCAAATGGCTG
AAAAGTACCTGAAAAAGTGTTCCGCATCCTTAATCATCAGGGAAATGCAA
ATCAAAACAATCATGTGATTCCACCTCACACCAGTCAGAATGGCTAAGTT
CAAAAATTCAGGTGACAGCAGATGCTGGCAAGTATGTAGAGAAAGAGGGA
CACTCCTCCATTGTTGGTGGGATTGCAAGCTTGTATAACCACTCTGAAAA
TCAGTCTGGCAGTTCCTCAAAAATTGGACATAATAGTACCAGAAGATCCA
GCAATTCCTCTCCTGTGCATATACCCAGAAGATGTTCCAACTTGTAATAA
GGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAA
CCTGGAAAGATCCCAGATGTCCCTCAACAGAGGAATTGATAGAGAAAATG
TGGCACATTTACACAATGGAGTACTACTCAGATATTAAAAACAATGAATT
CATTAAATACTTAGGCAAATGGATGCATCTGGAGGATGTCATTGTGAGTG
AGGTAACCCAATCAGAAAAGAACACACATGGTATGCACTCACTGATAAGT
GGATATTAGCCCAGAAACTTATAATATCCAAAATACAATTTGCAAAACAC
ATGAAACTCAATNACCCAGATACNAGATACAAAGCA

Query= MSMg01no276_a24.b1 MSMg01no276_a24.b1 CHROMAT_FILE:
MSMg01no276_a24.b1 PHD_FILE: MSMg01no276_a24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:15:55 2005
         (677 letters)



>mm_chr2_15644741_15645819
          Length = 1079

 Score = 1201 bits (621), Expect = 0.0
 Identities = 661/675 (97%), Gaps = 4/675 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaataatcttcactggccgctcattttatccctaacttctccattcccccatcca 64
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaataatctttactggccgctcattttatccctaacttctccattcccccatcca 264

                                                                       
Query: 65  agaagaatgtaaccataaacaaagtagaccctggacaggaacatgagcttttgaggaaga 124
           ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agaagaatgtaattataaacaaagtagaccctggacaggaacatgagcttttgaggaaga 324

                                                                       
Query: 125 ggtgtcccaaccttttggcactgtcgtataaagtttctatctaccaagtttacactggag 184
           ||||||||||||||||||||||||| ||||| ||||||||||||||| ||||||||||||
Sbjct: 325 ggtgtcccaaccttttggcactgtcatataacgtttctatctaccaactttacactggag 384

                                                                       
Query: 185 aaccacaagtacaaaagaagggcagaaagtctcacaatgtgttaagtaagctcaagattt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aaccacaagtacaaaagaagggcagaaagtctcacaatgtgttaagtaagctcaagattt 444

                                                                       
Query: 245 tctgacagtatatccttgtctgcagacaaatttctcgataagttagaaagact--atttg 302
           ||||||||||||||||||||||||||||||||||| |||||||||||||||||  |||||
Sbjct: 445 tctgacagtatatccttgtctgcagacaaatttctagataagttagaaagactttatttg 504

                                                                       
Query: 303 cctctggaaatctactttaatattaataacagaaatattttcagatagattctatagtga 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 cctctggaaatctactttaatattaataacagaaatattttcagatagattctatagtga 564

                                                                       
Query: 363 aagatgtaatgctattttaactaatttataatgttttgatatgtcatgcatgacacatgc 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aagatgtaatgctattttaactaatttataatgttttgatatgtcatgcatgacacatgc 624

                                                                       
Query: 423 tgataaaaacggtgtgtcatatttaatactgctaagtaaaaagatgcttaagctatgttg 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tgataaaaacggtgtgtcatatttaatactgctaagtaaaaagatgcttaagctatgttg 684

                                                                       
Query: 483 taaataaggcaaggccatacttaacaaaattgtgtacagaagggctgactgtgactttgc 542
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 685 taaataaggcagggccatacttaacaaaattgtgtacagaagggctgactgtgacttcgc 744

                                                                       
Query: 543 ataacatttttcttccaagt-atctatagtttgctagaatgtacatagaaaggttttaga 601
           |||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct: 745 ataacatttttcttccaagtga-ctatagtttgctagaatgtacatagaaaggttttaga 803

                                                                       
Query: 602 tgtaatactctgacatacactctcagttaaccacactcaaagatgtgtggttttttactg 661
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 804 tgtaatactctgacatacactctcagttaaccacactcaaagatgtgtggttttgtactg 863

                          
Query: 662 ttccctcatcttgga 676
           |||||||||||||||
Sbjct: 864 ttccctcatcttgga 878


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 677
Length of database: 1079
Length adjustment: 10
Effective length of query: 667
Effective length of database: 1069
Effective search space:   713023
Effective search space used:   713023
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)