BAC Information

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BAC

Clone NameMSMg01-276B08
Chromosome2 (Build37)
Map Location 135,894,704 - 135,894,999
singlet/doubletsinglet
Overlap gene6330527O06Rik
Upstream genePlcb1, LOC100043487, LOC100043786, LOC100043788, Plcb4
Downstream genePak7, LOC668910, LOC100043492, BC034902, Ankrd5, Snap25, LOC668911, Mkks, 2210009G21Rik
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-276B08.T7 (MSMg01no276_b08.b1)MSMg01-276B08.TJ (MSMg01no276_b08.g1)
ACCAG414364AG414365
length750747
length of high quality
(start - end)
322 (45 - 366)298 (77 - 374)
definitionCHROMAT_FILE: MSMg01no276_b08.b1 PHD_FILE: MSMg01no276_b08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:15:56 2005CHROMAT_FILE: MSMg01no276_b08.g1 PHD_FILE: MSMg01no276_b08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:15:57 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAAGGCCCATACCTAAACATAATAAAAGCAATCTACAGCAAACCAGT
AGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAAT
CAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTCAACATAGTA
CTTGAAGTATTAGCCAGAGCAATTCGACAACAAAAGGAGATCAAGGGGAT
ACAAACTGGAAAAGAGGAAGTCAAAATATCACTTTTTGCAGATGATATGA
TAGTATATATAAGTGACCCTAAAAATTCCACCAGAGAACTCCTAAACCTG
ATAAACAGCTTTGGTGTATTTATCTGGCCCCCCCCCCAACTCAAACAAGT
CAATGGCCTTTCTCTACACNAAGAATAAACAGGCTGAGAAAGAAATTAGG
GAAACAACACCGTTCTCAATAGTCACAAATAATATAAAATATCTCGGCGT
GACTCTAACTAAGGAAGTAAAAGATCTGTATGATAAAAACTTCAAGTCTC
TGAAGAAAGAAATTAAAGAAGATCTCAGAAGATGGAAAGATCTCCCATGC
TCATGGATTGGCAGGATCAACATTGTAAAAATGGCTATCTTGCCAAAAGC
AATCTACAGATTCAATGCAATCCCCATCAAAATTCCAACTCAATTCTTCA
ACGAATTAGAAGGAGCAATTTGCAAATTCATCTGGAATAACAAAAAACCT

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGAATATGTCACTAGCACTCACTG
CTTTCTCCTTTCTCATTTCAGAACATAAATGTCCAGTGGATGAGCAAGAG
CAGTTGGAAGAGACCCTGCCCCTGATCCTGGGCCTCATCTTGGGCCTTGT
CATTGTCATAACACTTGTGATCTACCACATCCACCATAAAATGACTGCCA
ATCAAGTGCAGATCCCCAGGGACCGTTCCCAGTACAAGCACATGGGCTAG
GGACAATCAGGCAGACAGCCTCCTCATCCTGCCCCCAAACCAGATGATGT
AGAACGACAATGGCACTTTTTCTCCTGCCCCCCGCCACCCACCAACATAG
CTACACTCCAACAGGCCCAGGCAACTGAGGTGTGACTGGACTGTGTCCAT
GCTTAAACCCAGGGATGGAAGGCATGTCTTGGGGTTCGGGGGGATTAATG
GTGGCTGTTGTGTCCATACTGCGGAGTAAGTAGGGGCTGGTGAGTAGGGT
AATAGCTTTCTTATTCCTGATGGTTTAATTTTGATTCTCTGACTTTGTAA
GTCTACAGCACGTAGAAAGAAAGAAAGATGTGGCCCTTGCATTTACAAAG
CGGATACGCTTCCTTTGGGAGACCTCTCTAGGCCAGAAGAACCCAGGTGC
TTTCCCTCCCTCGGCCTCAGCTGGCATACTTACATGGTTTTTCAGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no276_b08.g1 MSMg01no276_b08.g1 CHROMAT_FILE:
MSMg01no276_b08.g1 PHD_FILE: MSMg01no276_b08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:15:57 2005
         (298 letters)



>mm_chr2_135894504_135895201
          Length = 698

 Score =  557 bits (288), Expect = e-163
 Identities = 294/296 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agaatatgtcactagcactcactgctttctcctttctcatttcagaacataaatgtccag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agaatatgtcactagcactcactgctttctcctttctcatttcagaacataaatgtccag 260

                                                                       
Query: 61  tggatgagcaagagcagttggaagagaccctgcccctgatcctgggcctcatcttgggcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tggatgagcaagagcagttggaagagaccctgcccctgatcctgggcctcatcttgggcc 320

                                                                       
Query: 121 ttgtcattgtcataacacttgtgatctaccacatccaccataaaatgactgccaatcaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttgtcattgtcataacacttgtgatctaccacatccaccataaaatgactgccaatcaag 380

                                                                       
Query: 181 tgcagatccccagggaccgttcccagtacaagcacatgggctagggacaatcaggcagac 240
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 381 tgcagatccccagggaccgttcccagtacaagcacatgggctagggaccatcaggcagac 440

                                                                   
Query: 241 agcctcctcatcctgcccccaaaccagatgatgtagaacgacaatggcactttttc 296
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atcctcctcatcctgcccccaaaccagatgatgtagaacgacaatggcactttttc 496


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 298
Length of database: 698
Length adjustment: 9
Effective length of query: 289
Effective length of database: 689
Effective search space:   199121
Effective search space used:   199121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)