BAC Information

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BAC

Clone NameMSMg01-276D02
Chromosome2 (Build37)
Map Location 9,482,269 - 9,482,560
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040710
Downstream geneLOC100040548, LOC100040566, Gata3, LOC100040768, 4930412O13Rik, Taf3, Atp5c1, Kin, Itih2, Itih5, Sfmbt2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-276D02.T7 (MSMg01no276_d02.b1)MSMg01-276D02.TJ (MSMg01no276_d02.g1)
ACCAG414444AG414445
length718747
length of high quality
(start - end)
293 (71 - 363)291 (77 - 367)
definitionCHROMAT_FILE: MSMg01no276_d02.b1 PHD_FILE: MSMg01no276_d02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:16:05 2005CHROMAT_FILE: MSMg01no276_d02.g1 PHD_FILE: MSMg01no276_d02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:16:05 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGACCGCGGA
ATTCTTGATCTTTGCACAAAACTTCTTGAATGCTGGTAGTGCACACCTCT
TTCATCATGCTGTGTTTTGTCCCTTACTGGGGAGGGGTTCAAACAAGGGC
CTCATACACACTAGAGCAGGTACTCTACACTTGCCAGACATCCACAGCCT
GCAGTCTTGTTTCTTGAGAAAGCAGAAAATCTCTGTTGCCATGTTTCTCT
GGGCCACTCACTCTTCACTGTGCATTCTGACCTCTCCCCAAACTGTTCCG
CTGAAATTGCTCCCCCACACCATTGTCACAGATAACCTCCTAATAGCCAG
TGCTTGTCTTCTTGTTTGGCGCCATCCCACACTGTGACCACGGTCAACTC
TTGGAATTTCCTTCTCAGGCCCAGACCAATTATTCAGCAGTACTGAGCAT
CCACCAAGAGTACAGGAAACAATGAGAAATGTTAGAATCCTAATAACAAT
AATATCCTTATTTACTGAGCAAGCACCAACTGGCAGCCTCTCCTTTACCT
CTCTCCATCAGTGCATGTCTCTTGCTATCTTTTGTTTCCCTTAGGACATT
CTTCACATCTCTTTTCTTCTCTACTGATTCCTCTTGGACTATCTCATCAA
CATCCATAATCTACACCAGGTCAGCTCTCAAATATACACCCTATCACAAT
TATCCATTATCTCTGTCN
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATGCCTGATATTAAATCTGATCAA
AATCCCATGGCTTGTCCTAGTGGATATCAAACCACCAGTGTATTGCTAAA
TGATTCTATTGATAAATGGATGTCTAAATATTTATGACTGTATTCATCCA
TAAGTGCTGCCATCAGAGAAGCTTTCTTCTGCATTGGGTAGCTGTCAACA
CAGAGACTCATAGTTGGTTAAGTGTCTTAGTGGTCAGCATTAAATAGAAA
ATCTCTATCAGCTCGGCAACCCCTAAAGGATAAGGGAACACCGTGGAAGT
GGGACAGAAAGAATAAAGAGCTGGATTTCTGCGACATGCTTTTTTCTGTG
ACACTGGATTGACCAACTCATAGCACAGTCTGCATAAGACCTGCACAAGG
TCAAGCTAGTTAAAATTACAGCTCCTGAGACCCCACCCTAGCTGGAGAGT
TATCAGCAACTGGTGGCTGCTGGGGGAGGGATAGTCACTTTTGTGTGTGC
TTCCCGTTGTCTGTCCGTTTATTTTCCTTCTCCTTCTCTCCTTTTTCTCT
CTTGTTTACTTCATTTGATTCCTTCCTACTTTTTCCTTTCCCTCCACCCT
TTTGCTCCCTTGTCATTGCTTATACTATTTTCCCACTATGCCTCCCTCTT
TTTTCCCCCTCCCGTGCCCCCCACATCTATATTTTTCCCCCCTTTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no276_d02.b1 MSMg01no276_d02.b1 CHROMAT_FILE:
MSMg01no276_d02.b1 PHD_FILE: MSMg01no276_d02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:16:05 2005
         (293 letters)



>mm_chr2_9482069_9482762
          Length = 694

 Score =  503 bits (260), Expect = e-147
 Identities = 284/292 (97%), Gaps = 1/292 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   acttcttgaatgctggtagtgcacacctctttcatcatgctgtgttttgtcccttactgg 60
           |||||||||||||||| ||||||| ||| ||||||||||||||||||||| | |||||||
Sbjct: 201 acttcttgaatgctggcagtgcacgcctttttcatcatgctgtgttttgtgcgttactgg 260

                                                                       
Query: 61  ggaggggttcaaacaagggcctcatacacactagagcaggtactctacacttgccagaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggaggggttcaaacaagggcctcatacacactagagcaggtactctacacttgccagaca 320

                                                                       
Query: 121 tccacagcctgcagtcttgtttcttgagaaagcagaaaatctctgttgccatgtttctct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tccacagcctgcagtcttgtttcttgagaaagcagaaaatctctgttgccatgtttctct 380

                                                                       
Query: 181 gggccactcactcttcactgtgcattctgacctctccccaaactgttccgctgaaattgc 240
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gggccacttactcttcactgtgcattctgacctctccccaaactgttccgctgaaattgc 440

                                                               
Query: 241 tcccccac-accattgtcacagataacctcctaatagccagtgcttgtcttc 291
           |||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tccccccccaccattgtcacagataacctcctaatagccagtgcttgtcttc 492


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 694
Length adjustment: 9
Effective length of query: 284
Effective length of database: 685
Effective search space:   194540
Effective search space used:   194540
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)