BAC Information

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BAC

Clone NameMSMg01-276E24
Chromosome2 (Build37)
Map Location 157,713,194 - 157,713,490
singlet/doubletsinglet
Overlap geneCtnnbl1
Upstream geneLOC100043880, Ndrg3, LOC668943, Dsn1, 9830001H06Rik, Gm1332, Samhd1, Rbl1, LOC100043882, 4922505G16Rik, Rpn2, Ghrh, LOC100043678, Manbal, Src, Blcap, Nnat
Downstream geneLOC100043681, Gm691, 2610036D13Rik, 2610304G08Rik, Tgm2, D630003M21Rik, Bpi, Lbp, 9430008C03Rik, A930034L06Rik, B230339M05Rik, LOC628935, BC054059, LOC545481, Slc32a1, Actr5, Ppp1r16b, 2310007D09Rik, Dhx35, LOC100043891
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-276E24.T7 (MSMg01no276_e24.b1)MSMg01-276E24.TJ (MSMg01no276_e24.g1)
ACCAG414531AG414532
length728726
length of high quality
(start - end)
264 (430 - 693)296 (431 - 726)
definitionCHROMAT_FILE: MSMg01no276_e24.b1 PHD_FILE: MSMg01no276_e24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:16:13 2005CHROMAT_FILE: MSMg01no276_e24.g1 PHD_FILE: MSMg01no276_e24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:16:14 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACTGCCCACCAACTCTGCCTCCTCCTTAATATTTAATACCAGAAA
GGCTATGGGCATGATTCCACCAACGCCTACTCTACAGTGAGCCTCAAAGA
TATATATGCCAAATGATGGAAGCTATTGCTTTAGTAACTTTGACTTCCTC
TATGTGAACATGGAAGAAGACAAAGAAGCAGCCAGCTTAAAGAGATGGAG
GGGAGCTTCCGGTTTCCTTCTGCACCCGGAGCTGACCCTGTGCCATACCC
AAATACCACCAGGAGAGAGTTGGTCTCCCAAGAGTGCTGACACACCTGAG
AGCCATTTTTTTTCTCCACCCCCGCTCACATTCCTGGCCCAAGAGTGACT
CGCACAAAGCCATCAGGACACAAAAACCAAGGAACAGCCAGGGACAGGAT
CCTTCCAGTTTCTGTCTGTACCATGGAGCTGACCCTGTGTCACTGCTCTC
CATACCCAAATTTCTCCCAGAGAGAGCTGGTCTCCCAGGAGTGCTGACAC
ACAGGCTTACAGGAGGGACAAGCCACAGTCAGAGACAGACCAGCTAATAC
CACAGATAAGCAGATGGCGAGAGACAAGTACAAGAACATAAGCAACAGAA
ACCAAGGCTACTTGGCATCATAAGAACCCAGTTCTCCCACCACACACCAG
ATAAGCAAGACTCTGATTTAATATCACT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTGGGTTCACAGTGAGCTTGGGA
TACGTGTGGTAACCGTCACCCTTTGCCAGAAGCCTGTAAGCACCTCCCTA
GGGCTCAGAGGAGAGGGTTTGGATATTTGAAGCCATTAGTGTGCGGGTAC
AGTTACAGGAGGGAACTGGGTGCCATTACTTGGTCAAGAAGGCCTGCAAC
AGTGATGCCGACCTTTATAATAGGAGGGTCTCAATCCTGTCCTGAGGCCG
CCCTGCCTCTTACACGGCAGGGGAGCCTATGCCTGTGCTGTGATTCAGGG
CTGGTGCTTTTTCTCTGACCCCCCCCAGGGTGCAGGAGGACCCTCAGGGC
AGTGTGAGGTCAGGGTTGAGATTAAAAGACAGGCAGTAAATCAAGGCTGG
CTCTGTGCAGGCCACCCCAGGAAGCCTGCCCTGCCCTCCTCTCAGCCCCA
TCACTCCCCTCCCTGTCACCATCAAACTGAGTGAAGAAACAAAGCCTCGT
AAAGAATACCAGCTCATCGCTCTGTCCTCTTTGATTTTAATTTTGTTTTT
CAGTTTGGGTTGCTTCCTTTTTTTTTTAACATACTAATTAGATGAGAGCT
TTTTTTTTTCTTTGATTTTATGGCCTACATATTTCCTAAGTTTTGCTGGC
AGGATGACAGCTGATGTATCCCTTGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no276_e24.g1 MSMg01no276_e24.g1 CHROMAT_FILE:
MSMg01no276_e24.g1 PHD_FILE: MSMg01no276_e24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:16:14 2005
         (296 letters)



>mm_chr2_157712994_157713690
          Length = 697

 Score =  559 bits (289), Expect = e-164
 Identities = 295/297 (99%), Gaps = 1/297 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggcagtaaatcaaggctggctctgtgcaggccaccccaggaagcctgccctgccctcct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aggcagtaaatcaaggctggctctgtgcaggccaccccaggaagcctgccctgccctcct 260

                                                                       
Query: 61  ctcagccccatcactcccctccctgtcaccatcaaactgagtgaagaaacaaagcctcgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctcagccccatcactcccctccctgtcaccatcaaactgagtgaagaaacaaagcctcgt 320

                                                                       
Query: 121 aaagaataccagctcatcgctctgtcctctttgattttaattttgtttttcagtttgggt 180
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaagaacaccagctcatcgctctgtcctctttgattttaattttgtttttcagtttgggt 380

                                                                       
Query: 181 tgcttcctttttttttt-aacatactaattagatgagagcttttttttttctttgatttt 239
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgcttcctttttttttttaacatactaattagatgagagcttttttttttctttgatttt 440

                                                                    
Query: 240 atggcctacatatttcctaagttttgctggcaggatgacagctgatgtatcccttga 296
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atggcctacatatttcctaagttttgctggcaggatgacagctgatgtatcccttga 497


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 296
Length of database: 697
Length adjustment: 9
Effective length of query: 287
Effective length of database: 688
Effective search space:   197456
Effective search space used:   197456
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)