BAC Information

Click to search

BAC

Clone NameMSMg01-276H03
Chromosome2 (Build37)
Map Location 78,894,105 - 78,894,341
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667920, OTTMUSG00000016703, LOC383717, LOC100040476, LOC100040494, 4930401B11Rik, Ube2e3
Downstream geneLOC100040526, Itga4, Cerkl, Neurod1, Ssfa2, Ppp1r1c, Pde1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-276H03.T7 (MSMg01no276_h03.b1)MSMg01-276H03.TJ (MSMg01no276_h03.g1)
ACCAG414628AG414629
length767763
length of high quality
(start - end)
239 (128 - 366)290 (77 - 366)
definitionCHROMAT_FILE: MSMg01no276_h03.b1 PHD_FILE: MSMg01no276_h03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:16:23 2005CHROMAT_FILE: MSMg01no276_h03.g1 PHD_FILE: MSMg01no276_h03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:16:23 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAGAGTACTTTTCTCTCCCCAACTTTCATATTTGTTTCACTAAACAC
TTCATCTTGAATGTAGTCTTCTGCAAATGTTCTATGTTCTAGGCAAAGAG
AGGAAAGTTCAGTGGTGTTTACTCTTGAGAAGCTATAGTCTAATGGAGAA
AGTATTGGTGTGTTGTAAGAAACAGACCAGACAGAGAACTCAAAAATCAT
AACCATCAGAGAACAACACTGAGCAGCAAGGAGCACCCCAGGGTAGATGG
GTTGAGCCAAACAAGGCTTTCTACCATCTCATTTTGTTTGTCTTTATGCC
CATATAAATCCTTGTTCTTCTCCTTTAACCGCACTATAAAGTATCCTTTA
AGAAGGGAGAGATGTGTGGCATTGGTTTAATGATAATATAATGCACCATT
ATATCATCATTTTAATAAAGGCGCTATGCTGGTCACTGGGCAGGTGTAAT
ATCTCGTTCTACACATATAGGTAGTTTAGTAGGTGAGGTGCATATCACAA
ATAACAGATTAATAAGATGAGAGCATATAAACTTATTAATCTAAATTTTA
CATGATGTGGGTATCTCCATAAAAAAGACCCCCCCAAATGAAAGACACCT
TTATATTTTAATGTTTTGTTTTGATGAAGAGTAGACAGTCATTAAGAAAC
ATCATTTGACAAACAGTGTGTTCTATGGATGATGGGAATGATCTGATAGG
GCCATTTTCTTAGCACA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTGCAGTGGAATACTATTCAGTCA
TTAGAATAGGTAAAATTTTATTAGCCCCACAATACAGATGGGGGCAGAGA
TAGAAATAGTGAAGTAAGCCAGGTACAGAGAGATGGGTTCCACCCAATCT
CAGCAATATGCGAAATTTACTAAAGCCAGTCTCAGAAACCGAGAGTAGAG
TGGTGTTGGCAGAGGCTAGCAATAGCAGTATGGAGGCAGATGAGGGGATT
GACCAGCATCATACTTGGACTGAAGTTAAGTAGGGACTAGTAGGGTGACT
CCAGATTTAAAACGATTTTTATTATAGAGACTCCCGATTAAAAGTGACCT
GAAGACTTTGAAAGTCAACATTATAAAGCAATGATCAATAACTTAAGAGG
AATAGTTAACCACATTCAAACATTGTATAATATATACATAGTTTAAAATA
TTACACTGGCCCTTTAATACATAACTTTGCATAACTACGTATTATAGAAT
TTCATGATATAATTTTAATGTTCATAGGTATCTGTTGAAAATTAATGTAA
ATTAAGATGTGAAATAATAATTCTGGGGCTGGAGATATAGTTCAGTTGGT
AGAGTGCCTCCTAGCATGTACAAAATTGTGGGTTCTGTCCAAAGAATCAC
TTGTCCTAGGGATGTAGGCTTGAAGGCCACATGCCAACACTCTGGAAGTG
GAGGAGGCATAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no276_h03.b1 MSMg01no276_h03.b1 CHROMAT_FILE:
MSMg01no276_h03.b1 PHD_FILE: MSMg01no276_h03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:16:23 2005
         (239 letters)



>mm_chr2_78893905_78894543
          Length = 639

 Score =  404 bits (209), Expect = e-117
 Identities = 230/237 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgttctatgttctaggcaaagagaggaaagttcagtggtgtttactcttgagaagctata 60
           ||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct: 437 tgttctatgttctaggcaaggagaggaaagtttagtggtgtttactcttgagaagctata 378

                                                                       
Query: 61  gtctaatggagaaagtattggtgtgttgtaagaaacagaccagacagagaactcaaaaat 120
           |||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||
Sbjct: 377 gtctaatggagaaagtattggtgtgttgcaagaaacagaccagagagagaactcaaaaat 318

                                                                       
Query: 121 cataaccatcagagaacaacactgagcagcaaggagcaccccagggtagatgggttgagc 180
           ||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||
Sbjct: 317 cataaccatcagagaacaacactgagcggcaaggagcaccccagagtagatgggttgagc 258

                                                                    
Query: 181 caaacaaggctttctaccatctcattttgtttgtctttatgcccatataaatccttg 237
           ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 257 caaacaaggctttctaccatctcattttgtttgtcttcatgcccatataaatccttg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space:   144900
Effective search space used:   144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)