BAC Information

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BAC

Clone NameMSMg01-276H23
Chromosome2 (Build37)
Map Location 59,901,953 - 59,902,269
singlet/doubletsinglet
Overlap geneBaz2b
Upstream genePkp4, LOC625354, 2310032F03Rik, LOC100038999, LOC100039016, Tanc1, Wdsub1
Downstream geneLOC667103, LOC667106, Ldha-ps, LOC100039092, March7, Cd302, LOC625861, Ly75, LOC100039176, Pla2r1, Itgb6, Rbms1, ENSMUSG00000075325
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-276H23.T7 (MSMg01no276_h23.b1)MSMg01-276H23.TJ (MSMg01no276_h23.g1)
ACCAG414665AG414666
length748885
length of high quality
(start - end)
321 (45 - 365)---
definitionCHROMAT_FILE: MSMg01no276_h23.b1 PHD_FILE: MSMg01no276_h23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:16:27 2005CHROMAT_FILE: MSMg01no276_h23.g1 PHD_FILE: MSMg01no276_h23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:16:27 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTGTATCTGATAACATTCTGCACAAGCAAGACAGCACAGTGAGCAGG
GCTGATCAGAGCAAGCATTAGGCCCTAAATTCAATTCCCAGCAACTGTAT
GAAGGCTTACAACTATTTGTACAGCTACAGGGTACTGATATACAGAAAAT
AAACAAACAAATCTTAAAAAAAAAAGACCACATAATGGGTAGATCTTGCT
ATGCAAGCCTAGGACCCAAGTGTAAATCTAGTACCGAGTAAACATCCCAG
GGGCACAGCTGCCTTTAGGCCCTGCACTGTGGGCCAGAAACAGGTGGATC
AGCAGAGCTCGCTGGCTAGTCAGCCCACCCCCACAGAATGCTGTACCAGT
TAGTTCTCTATTGGCATGTGTTTACTTGACATATATATCAGATTTTTATC
AAGTCTCACATTTCTAATGTCACCATTATTAGTTATTATATTCATTGCAG
TAATCTTCGAACAGTGGTGTTCATATCCGTGAAGTCTGAGGCAGTATGAA
ATGAGCTGCCTCCATATTAGAAGCTGTGACGGTTTGAATGAAAATGGCCC
CCATAGACCCAGAGGGAGTAACAGTATTAGAAGGAGCAGCCTTCTCTTGT
TGGAGTAGTTGTAGCCTTGTTGGAGGAAGTGTGTCACTGGGGCTGGGTTT
TGAGGTCTCAGCTGTTCAAGCCAGGCCCAGTGTTTCACTCTCTTCCTG
GGGTGAGGACGGGTATGGGGANATAATTTANAAGTATATGTTAGAATAAA
AGAAAATTCAAAAGAAGTAGATGGAATGAGATTAAGGGAGGGGGGGGGGG
AGTTTAGATTTCGTGTAGAGAGGAAAATTTATGACAAGTAGAAAGAATAG
AGGAAGAAGTATTAATACAAAGAGGATGGTGGTATAGGAAAGGGGGAGCA
GAAGGTTAATGAAGGAAATATAAAGTTTATATGATAAAAGATATGTGGAG
AGGGGGAGAGGAGAGAGGGAAAAAACTATAGTCTTTTATNNATAATTATT
ATTNNNNNNNCCCGCGGCTAATGCACATAGANGGGGGGNNTAGGGCCCGC
GGGGGGNTNNNNTCTGGGGGACCCGGTTCCCGTGTGTCCCCGGTTCTCGG
TAACCAATTTTTTTTAAGGGGGTGGGGCACCACCCTAATTTAGCAAAAGG
GGAATCCCCGTGGGGGGNNAAAATATTCCGATGGGGGGGTTNTCAATTAA
TTCCTTCAAGCCAAACTTTGGGGTCCGGAATTTAACCCCTTTTGGGTCTT
TTCCTGGCCGGGCCCCCTCTTTTTAAGGGGGGGGGGCCCCAAGGGAAAAT
TTTCCCTTTTAAAACCCCCAGGGGGGTTTTCCTTTTCCTCTGGGGGGGGG
GGTTAAGGGGGGGAAAAACCCCCTTAAAATTCCGGGGGCCCAGGGGGGGG
CCCCCCCCCCAAAAAAAATTTTTTTATGGGGGTGGGGGGGGGGTGGGCGA
AAAGAAAGGGGGGGTAATTTTAAATAGAGGGGGGGGGGGGGGGGAATATT
TGGGGTTCACGGGCACACCATTTCTTCTCTTTATAAAAAAAGAAACAAAT
ATTAAACACCGGGGGGGGGGGGGGGTGGTCTCCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no276_h23.b1 MSMg01no276_h23.b1 CHROMAT_FILE:
MSMg01no276_h23.b1 PHD_FILE: MSMg01no276_h23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:16:27 2005
         (321 letters)



>mm_chr2_59901749_59902469
          Length = 721

 Score =  553 bits (286), Expect = e-162
 Identities = 310/318 (97%), Gaps = 2/318 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctgtatctgataacattctgcacaagcaagacagcacagtgagcagggctgatca 64
           |||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||
Sbjct: 205 gaattctgtatctgataacactctgcacaagcaagacagcaccgtgagcagggctgatca 264

                                                                       
Query: 65  gagcaagcattaggccctaaattcaattcccagcaactgtatgaaggcttacaactattt 124
           |||||||||  ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gagcaagcag-aggtcctaaattcaattcccagcaactgtatgaaggcttacaactattt 323

                                                                       
Query: 125 gtacagctacagggtactgatatacagaaaataaacaaacaaatcttaaaaaaaaaa-ga 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 324 gtacagctacagggtactgatatacagaaaataaacaaacaaatcttaaaaaaaaaaaga 383

                                                                       
Query: 184 ccacataatgggtagatcttgctatgcaagcctaggacccaagtgtaaatctagtaccga 243
           |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct: 384 ccacataatgggtagatcttgctatgcaagcctaggacccaagtataaatctagtaccca 443

                                                                       
Query: 244 gtaaacatcccaggggcacagctgcctttaggccctgcactgtgggccagaaacaggtgg 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gtaaacatcccaggggcacagctgcctttaggccctgcactgtgggccagaaacaggtgg 503

                             
Query: 304 atcagcagagctcgctgg 321
           ||||||||||||||||||
Sbjct: 504 atcagcagagctcgctgg 521


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 721
Length adjustment: 9
Effective length of query: 312
Effective length of database: 712
Effective search space:   222144
Effective search space used:   222144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)