BAC Information

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BAC

Clone NameMSMg01-276N07
Chromosome2 (Build37)
Map Location 119,541,266 - 119,702,141
singlet/doubletdoublet
Overlap geneRtf1, Itpka, Ltk, Rpap1, Tyro3, 6330405D24Rik
Upstream genePlcb2, LOC100043272, A430105I19Rik, Disp2, D2Ertd750e, Ivd, Bahd1, Chst14, LOC677379, Ccdc32, Rpusd2, Casc5, Rad51, 1200015F23Rik, Gchfr, Dnajc17, OTTMUSG00000015762, LOC545640, Zfyve19, Ppp1r14d, Spint1, Rhov, Vps18, LOC100043609, Dll4, Chac1, Inoc1, LOC100043612, Exdl1, 1500003O03Rik, LOC100043307, Oip5, Nusap1, Ndufaf1, LOC625328, LOC100043622
Downstream geneLOC625403, Mga, Mapkbp1, Pla2g4b, Spnb5, Ehd4, Pla2g4e, LOC100043635, Pla2g4d, Pla2g4f, Vps39, Tmem87a, Ganc, Capn3, Zfp106, Snap23, Lrrc57, Cep27, Stard9, Cdan1, Ttbk2, Ubr1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-276N07.T7 (MSMg01no276_n07.b1)MSMg01-276N07.TJ (MSMg01no276_n07.g1)
ACCAG414903AG414904
length755758
length of high quality
(start - end)
314 (45 - 358)290 (77 - 366)
definitionCHROMAT_FILE: MSMg01no276_n07.b1 PHD_FILE: MSMg01no276_n07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:16:50 2005CHROMAT_FILE: MSMg01no276_n07.g1 PHD_FILE: MSMg01no276_n07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:16:50 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(119,541,266 - 119,541,575)(119,701,852 - 119,702,141)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCACAGATCTGCCCAGTAAAAGGTAATTATAAGAAACCCACAACTTCT
CAGGCAGCTACTCATCTGCTTCCCAAATAGTTCATATGCATGAAATCATG
TATGTATAATCTTTGTATGCCTGACTCTTTTCCCCCTCCCCTCCCCTCCC
CTCCCCTCCCTCCCTCCCTCCTTCTTTCCTTCCTTCCTTCCTTCCTTCCT
TCCAGGCAGGGTTTCTCTTTGTAGTCCTAACTGTCCTGAAACTCATTATG
TATACCAAGCTGGCATAGAACTCACAGAAATCTGCCCACCTCTTTATCCC
AGATGCTGATATTTTTTTCATACGCCACCCCCCCAGCTGATGTCTTTTTT
TTTTGAGACAGGGCTTCTCTGTGTAAAAAAAAAAAGTCCTGGAACTCACT
CTGTAGACCAGGCGTGCCTTGAACTCAAAAATCCACCTGCCTCTGCCTCC
CAAGTGCTGTTATTAAAGGCATGTAACACCACTTCCTGGCTTCAACACCC
ATTGTTGAAAACTCACTTGCCTATTGATGGTAATATTACCCTTTTTTTAT
AATATATTGTTATAAGAAAGGGAAAGTTGATTTCTTTCTTATGAGCACCT
GCTATTGTTCCTAGAGGACCTGAGTATTGATTTTCCAGCATTCCACCTAT
AGGCTCTCAACCACCAGTTAATTCCGGGCCTCAGTATCCAGAACCTTCTT
TCTGT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAGGACAGCTAGACACACACAAAG
AAACTCTGTCTCTAAAAACACAAATGTACATATGTCTACACACATACATA
GATAATTTAAATATCTATACTAAACCCCAACTCTGTCTCATCAAAAAAAA
AAAAACAAACAAACAAACAAACCAACAACAACAACTATCAGAGGACTGGA
GAGATGATGGCTCAATAGTTAAGAGCACTGACTGGTTTGCCAAAAGTCCA
GAGTTCAATTCCAAGCAACCACATGGTGGCTTACACAATCTGTAATGGAA
ACTGATGCCCTCTTCTTGTGTGTTTACCCACCCCCCCCAACCTACTCATA
TGCATAAAATAAATAAATAAATCTTTTAAAAAAGAAAGAAAGAAAACTAT
CAGAGTCATCAAGAACTCTGAGAAACCATCAAGCAAGAGCTTAAGAAGAC
ATAACTATAGCCTAGTATGATGGCATGTGCCTGAAATTCCAGTATTTAGA
AGGCTAGGAAGATCAGGAGTTGAAAACAGGCTTCAGCTACCTAGCAAGTT
TGAGAAAAATTTAAATAGGTAAAAATAAAAATGTTAAACCACAGGAACGA
TAGTATAACTACTAAAAGTACTAATGTCTAGGTGCAAAGGCTTCAGTCCG
TCTATTCTGGAAACCAAGGCAAAAGATAGTAAATTCCAGGCCAATCTGGG
CTACAAGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no276_n07.b1 MSMg01no276_n07.b1 CHROMAT_FILE:
MSMg01no276_n07.b1 PHD_FILE: MSMg01no276_n07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:16:50 2005
         (314 letters)



>mm_chr2_119541062_119541775
          Length = 714

 Score =  576 bits (298), Expect = e-169
 Identities = 307/310 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcacagatctgcccagtaaaaggtaattataagaaacccacaacttctcaggcagc 64
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcacagatctgtccagtaaaaggtaattataagaaacccacaacttctcaggcagc 264

                                                                       
Query: 65  tactcatctgcttcccaaatagttcatatgcatgaaatcatgtatgtataatctttgtat 124
           ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tactcatctgctttctaaatagttcatatgcatgaaatcatgtatgtataatctttgtat 324

                                                                       
Query: 125 gcctgactcttttccccctcccctcccctcccctcccctccctccctccctccttctttc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gcctgactcttttccccctcccctcccctcccctcccctccctccctccctccttctttc 384

                                                                       
Query: 185 cttccttccttccttccttccttccaggcagggtttctctttgtagtcctaactgtcctg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cttccttccttccttccttccttccaggcagggtttctctttgtagtcctaactgtcctg 444

                                                                       
Query: 245 aaactcattatgtataccaagctggcatagaactcacagaaatctgcccacctctttatc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aaactcattatgtataccaagctggcatagaactcacagaaatctgcccacctctttatc 504

                     
Query: 305 ccagatgctg 314
           ||||||||||
Sbjct: 505 ccagatgctg 514


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 714
Length adjustment: 9
Effective length of query: 305
Effective length of database: 705
Effective search space:   215025
Effective search space used:   215025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no276_n07.g1 MSMg01no276_n07.g1 CHROMAT_FILE:
MSMg01no276_n07.g1 PHD_FILE: MSMg01no276_n07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:16:50 2005
         (290 letters)



>mm_chr2_119701824_119702513
          Length = 690

 Score =  561 bits (290), Expect = e-164
 Identities = 290/290 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   caggacagctagacacacacaaagaaactctgtctctaaaaacacaaatgtacatatgtc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 caggacagctagacacacacaaagaaactctgtctctaaaaacacaaatgtacatatgtc 259

                                                                       
Query: 61  tacacacatacatagataatttaaatatctatactaaaccccaactctgtctcatcaaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 tacacacatacatagataatttaaatatctatactaaaccccaactctgtctcatcaaaa 199

                                                                       
Query: 121 aaaaaaaaacaaacaaacaaacaaaccaacaacaacaactatcagaggactggagagatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 198 aaaaaaaaacaaacaaacaaacaaaccaacaacaacaactatcagaggactggagagatg 139

                                                                       
Query: 181 atggctcaatagttaagagcactgactggtttgccaaaagtccagagttcaattccaagc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138 atggctcaatagttaagagcactgactggtttgccaaaagtccagagttcaattccaagc 79

                                                             
Query: 241 aaccacatggtggcttacacaatctgtaatggaaactgatgccctcttct 290
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78  aaccacatggtggcttacacaatctgtaatggaaactgatgccctcttct 29


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space:   191361
Effective search space used:   191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)