Query= MSMg01no277_g21.b1 MSMg01no277_g21.b1 CHROMAT_FILE:
MSMg01no277_g21.b1 PHD_FILE: MSMg01no277_g21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:17:34 2005
(312 letters)
>mm_chr2_140949386_140950096
Length = 711
Score = 578 bits (299), Expect = e-169
Identities = 308/311 (99%), Gaps = 1/311 (0%)
Strand = Plus / Plus
Query: 1 cataagagtgcctttttacatggctaaaaattctccatgctgtcaagacactgtttggtt 60
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 201 cataagagtgcctttttacatggctaaaaattctccacgctgtcaagacactgtttggtt 260
Query: 61 cactcagaagaaatcatactatgaaagtagtattttttctgaaggactgatatcttttct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cactcagaagaaatcatactatgaaagtagtattttttctgaaggactgatatcttttct 320
Query: 121 tgagacagcatttttttcccagcatctggaataacaagcattggctatctgtgtcagacc 180
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgagacagcatttttt-cccagcatctggaataacaagcattggctatctgtgtcagacc 379
Query: 181 aagtcaacataccacagttatttattaacaagacttgcacccttcttaatagccttggtt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 aagtcaacataccacagttatttattaacaagacttgcacccttcttaatagccttggtt 439
Query: 241 atttcctccccaagggagaggtcagactcaaggaagttgtcattattttctttggtccag 300
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 440 atttcctccccaagggagaggtcagactcaaggaagttttcattattttctttggtccag 499
Query: 301 agtgtctttgt 311
|||||||||||
Sbjct: 500 agtgtctttgt 510
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 312
Length of database: 711
Length adjustment: 9
Effective length of query: 303
Effective length of database: 702
Effective search space: 212706
Effective search space used: 212706
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no277_g21.g1 MSMg01no277_g21.g1 CHROMAT_FILE:
MSMg01no277_g21.g1 PHD_FILE: MSMg01no277_g21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:17:34 2005
(673 letters)
>mm_chr2_141089105_141090177
Length = 1073
Score = 1263 bits (653), Expect = 0.0
Identities = 668/673 (99%)
Strand = Plus / Minus
Query: 1 caaacttacataattgaattccaaactgtgtatttttgagtaatatgggccctttttcac 60
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 999 caaacttacataattgaattccaaactgtgtatttttgagtaatatggggtatttttcac 940
Query: 61 atttctttaaaaaatagattttccatgatcatatattttattacataacaaaatataaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 939 atttctttaaaaaatagattttccatgatcatatattttattacataacaaaatataaat 880
Query: 121 ttatatcaaactgattaatttgtgactgctactgcttatatgaaagataagcaaaagtct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 879 ttatatcaaactgattaatttgtgactgctactgcttatatgaaagataagcaaaagtct 820
Query: 181 aagaaaaatagatcaggttaaggaaaaatacttacaaatagtaggcactctggtagaatg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 819 aagaaaaatagatcaggttaaggaaaaatacttacaaatagtaggcactctggtagaatg 760
Query: 241 cacatgtgtgtacactgatcgtgtgcataccatacctcactcactcgcacttctcattca 300
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 759 cacatatgtgtacactgatcgtgtgcataccatacctcactcactcgcacttctcagtca 700
Query: 301 ctgtactaacaggagcaaatgccattggtccaacaatacagtgcagacatttccactttt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 699 ctgtactaacaggagcaaatgccattggtccaacaatacagtgcagacatttccactttt 640
Query: 361 cctcacactaaacgggatgttatctttaccctctaataactgtctcttgctaaaaattta 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 639 cctcacactaaacgggatgttatctttaccctctaataactgtctcttgctaaaaattta 580
Query: 421 tgactaaaaagcaagtcattcatgtttaaagtccagaagctaaaaagcttagcccttatc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 tgactaaaaagcaagtcattcatgtttaaagtccagaagctaaaaagcttagcccttatc 520
Query: 481 taactataatgtacaattaatatggtttggtcttccttcacaactaactactgtcactct 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 taactataatgtacaattaatatggtttggtcttccttcacaactaactactgtcactct 460
Query: 541 caattaacttttctaggaagtttttcaattaacgctagagttcaaattagttaagcacag 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 caattaacttttctaggaagtttttcaattaacgctagagttcaaattagttaagcacag 400
Query: 601 tagcacagggtggcacagtaatgggactgcttccatgcttcttaattttctttgacaaag 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 tagcacagggtggcacagtaatgggactgcttccatgcttcttaattttctttgacaaag 340
Query: 661 gacaacaacaaaa 673
|||||||||||||
Sbjct: 339 gacaacaacaaaa 327
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 673
Length of database: 1073
Length adjustment: 10
Effective length of query: 663
Effective length of database: 1063
Effective search space: 704769
Effective search space used: 704769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
