BAC Information

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BAC

Clone NameMSMg01-277K15
Chromosome2 (Build37)
Map Location 42,296,739 - 42,297,014
singlet/doubletsinglet
Overlap geneLrp1b
Upstream geneLOC625094
Downstream geneLOC100041228
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-277K15.T7 (MSMg01no277_k15.b1)MSMg01-277K15.TJ (MSMg01no277_k15.g1)
ACCAG415501AG415502
length547760
length of high quality
(start - end)
---290 (76 - 365)
definitionCHROMAT_FILE: MSMg01no277_k15.b1 PHD_FILE: MSMg01no277_k15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:17:51 2005CHROMAT_FILE: MSMg01no277_k15.g1 PHD_FILE: MSMg01no277_k15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:17:51 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCGCGGAAT
TCTTTGTTTAGTGCTGTCCCCCATTTTTTTTCAATAAATGGTTTATTTTT
GGGGGTTTTTTCCCCCCCTGGGGGGAAAAAATTCCCTTTTAAAAAAACTT
TTTCCCGGGGGAATTTTCAAACCCCCCCCTTTTTGGGGGGGAAAAAAATT
TTAAAAGAATTTTTAAAAGGGGAAAACACAAAAATGCGCCCTTGGGAAAA
AAAAAAAAATTTTTTTTTCTTTTTGGGGGGGGNCCCCCCCCCAAAAAATT
CCCCCCGGGGGTTAAATTACCCCCCCCCCCCCCCAGATTTTTTTTTTTTT
TTTTGTGGAAAAAAAAACCCGGGGTGGTCCCCAAAAAAAAAATATTTTTT
TTTCCCAACAAAAAAAAAAAAGGGGGGGGCTTTTTTTTTAAAAAAAAAAA
AANAGAATCAGGGGAGGGGGGGGGGGGCCCCCTCCCCCTCTTTTTAAAGA
ATATTTATTTTATTATGAAAGGGGGGGGGGCCCCCCCCCCCCAAAAA
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTATGACTTTTTTTTTTCATTTCTA
AATTACTAAATGTGTTTGTTTGTTCATGGGCACATATTCAATAGGCTATT
GAGAAACAAAAAAAAAAAACAAAAAACAAAAAACATTTTTGTAGTTTTAT
TTAGTTTTGACTGGATTTGATCCTTCCTAAACCACAAGTCAAAGTTCAAA
ATCTATCCAAGAAGTGAACTAAATTCTTTAGAAAATGAATGACTTATGAA
TTCTTCAGAGATACAAATCTGTCTTGTGTCTAAGACACAATCAGGAGTTC
AACTGCGATACTAAAGGTCTTTTTATCCCCACCCCACCACACCATACTGC
CGCTTTTTCCCAGAAAATGTTGAACGAAATAATATACATGAAGATACNTA
CAATCACAGTCACCAATGCATCTCACAGATATTTGCACTGTTTGTTTAAC
ACTAGTATTAGTACATTTTATTTCATTTTCAATTGGATAAGTCAGTTAGT
GCGAATGTCTACTGATCAAAAGTTTATTCAAATCATGGCTTTACATAAAT
TCAAAATAAATATATATTAGCTGTATATTTCTGTAATTTTCTTTACACAT
TTTATCTAAATATTTTATTTTGTGTGGGCAAAGGATTTATTGCTCTTCAA
TATTGAAACTTTGGAGATGTATAAACTCTCATTCTCATTCTTGTTTTAGA
AGCAAATACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no277_k15.g1 MSMg01no277_k15.g1 CHROMAT_FILE:
MSMg01no277_k15.g1 PHD_FILE: MSMg01no277_k15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:17:51 2005
         (290 letters)



>mm_chr2_42296525_42297214
          Length = 690

 Score =  462 bits (239), Expect = e-135
 Identities = 271/293 (92%), Gaps = 20/293 (6%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttatgacttttttttttcatttctaaattactaaatgtgtttgtttgttcatgggcacat 60
           |||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 215 ttatgacttttttttt-catttctaaattactaaatgtgtttgtttgtttatgggcacat 273

                                                                       
Query: 61  attcaataggctattgagaaacaaaaaaaaaaaacaaaaaacaaaaaacattttt---gt 117
           ||||||||||||||||||||||||||||||||||                |||||   ||
Sbjct: 274 attcaataggctattgagaaacaaaaaaaaaaaa----------------ttttttttgt 317

                                                                       
Query: 118 agttttatttagttttgactggatttgatccttcctaaaccacaagtcaaagttcaaaat 177
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 agttttatttagttttgactggatttgatccttcctaaaccacaagtcaaagttcaaaat 377

                                                                       
Query: 178 ctatccaagaagtgaactaaattctttagaaaatgaatgacttatgaattcttcagagat 237
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 378 ctatccaagaagtgaactaaattcttgagaaaatgaatgacttatgaattcttcagagat 437

                                                                
Query: 238 acaaatctgtcttgtgtctaagacacaatcaggagttcaactgcgatactaaa 290
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 acaaatctgtcttgtgtctaagacacaatcaggagttcaactgcgatactaaa 490


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space:   191361
Effective search space used:   191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)