BAC Information

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BAC

Clone NameMSMg01-277P06
Chromosome2 (Build37)
Map Location 45,568,903 - 45,569,185
singlet/doubletsinglet
Overlap genenone
Upstream geneGtdc1, Zeb2, LOC100042661
Downstream geneLOC100041337, LOC666604, LOC383690
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-277P06.T7 (MSMg01no277_p06.b1)MSMg01-277P06.TJ (MSMg01no277_p06.g1)
ACCAG415710AG415711
length733747
length of high quality
(start - end)
344 (377 - 720)283 (77 - 359)
definitionCHROMAT_FILE: MSMg01no277_p06.b1 PHD_FILE: MSMg01no277_p06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:18:10 2005CHROMAT_FILE: MSMg01no277_p06.g1 PHD_FILE: MSMg01no277_p06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:18:10 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCGACGGATCCGCGGAATTC
TCAACTTTCCAAAAAAAAATGGCTGAGAAGCACTTGAAGAAATGTTCAAC
ATCCTTAGTCATCAGGCCAATGCAAATCAAAACAACCCTGAAATTCCACC
TTACATTAATCAGAATGATTGATAAGATAAGAAATGCAGGCAACAACAGA
TACTGGTAAGGATGTGGAGAAAGAGGACCACTCGTCCATTGCTGGTATGA
CTGCAAACTGGTAAAACCACTTTGAAAATCAATATGCCATTTCCTCCAAC
CTGAAGACCCATCTATTCNTTTCCTGGGCATATACCCAAACAATGCTCCA
ACATATTTTTTTGACACCCACCCCACTCTGTTTATAGCAGCCTTATTTAT
AATAACTGAAAGTTGGAAACAACCAAGATGTCCCTCGACAGAAGAATGGA
TACAGAAATTGTTATACATTTTCACATTGAAGTCCTACTCAGCTACATAA
AAATAATGACTTCACCTTCTGCCCATTCTTTTCTACTGGGGCAGACTGCT
AGCCAGTCTGTTCCCCTGAAGACACCATACCCTGAGCCATCTCAGAAGAT
CCACTGCACTCAGAGCATTTGTTAAGAATCCCCCTCTCCCAAAGTCTCAG
AGCTTCTGCTGGGAGAGAACTCAGGACCCATCACCCCCAAAAAACCCACC
CAGCAATTACCATGCACCTTCTGCCTGGTCCTA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTATTGATAAAGAAAGCTACCAGC
TAAATACCACAATGAAGTAGGGCCGCTTTTCTTTTTTCTTTTTCTTCTTT
GGTGTCATAAGTTTTTAAAGGTTTCTTTATTAAAGTATTTTTATTAAATT
TTTATTTTTATTATAATATCCTTTATTTTAAGAGTTTAATATATGTACAT
AATAAAATATGATAAATCTATTTCCCCATGTTTCCCTCCAGATCCTCTTA
TTCCTTCAAAATTTTCCACTCCTAATTTTATGGATTTTTTTGATAACCAA
GTAAGTCCAAATGTTTTGTTACCGCCCCCCACCCATTTACAAAATGAATC
TATTGTTAGTAATTACATACATGTATAAATAACATTTAACACCCATTACC
CATCCTTCCCTCTGTACTCTTGATGATGTCCTCTTATACGTATGCCTTTT
TTTCTGGTTAGTTCAGTTAGCCACAGTTGCTGTGAGAAAACCATTTCAAA
CCCAGGAGACAGTGTAAATCACACCTCTCCACCAGCTCTTTCAATCTCTT
TGTCCTTCTTATGAGTGAGTCATATTTACTGGAGTTTGGCTAGGAAGCTA
TGTGTATCTCACAGATTGCTGTGCCTCAACAGACCCTTACTGCCAGCACT
TAACCAGTTAACCAGTGAGACTCTGTGTTAGCTGCCCTCTGTAAAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no277_p06.g1 MSMg01no277_p06.g1 CHROMAT_FILE:
MSMg01no277_p06.g1 PHD_FILE: MSMg01no277_p06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:18:10 2005
         (283 letters)



>mm_chr2_45568703_45569385
          Length = 683

 Score =  501 bits (259), Expect = e-146
 Identities = 277/283 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttattgataaagaaagctaccagctaaataccacaatgaagtagggccgcttttcttttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||  | ||||||||||
Sbjct: 201 ttattgataaagaaagctaccagctaaataccacaatgaagtagggttgtttttcttttt 260

                                                                       
Query: 61  tctttttcttctttggtgtcataagtttttaaaggtttctttattaaagtatttttatta 120
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctttttcttctttggtgtcataggtttttaaaggtttctttattaaagtatttttatta 320

                                                                       
Query: 121 aatttttatttttattataatatcctttattttaagagtttaatatatgtacataataaa 180
           |||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 321 aattttaatttttattataatatcctttattttaagagtttaatatatgcacataataaa 380

                                                                       
Query: 181 atatgataaatctatttccccatgtttccctccagatcctcttattccttcaaaattttc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atatgataaatctatttccccatgtttccctccagatcctcttattccttcaaaattttc 440

                                                      
Query: 241 cactcctaattttatggatttttttgataaccaagtaagtcca 283
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cactcctaattttatggatttttttgataaccaagtaagtcca 483


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 683
Length adjustment: 9
Effective length of query: 274
Effective length of database: 674
Effective search space:   184676
Effective search space used:   184676
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)