BAC Information

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BAC

Clone NameMSMg01-278A13
Chromosome2 (Build37)
Map Location 58,337,023 - 58,337,307
singlet/doubletsinglet
Overlap geneAcvr1
Upstream geneGalnt5, A330104H05Rik, LOC667026, Pscdbp, LOC100042926, Acvr1c, LOC667062
Downstream geneLOC674940, Upp2, BC062650, Pkp4, LOC625354, 2310032F03Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-278A13.T7 (MSMg01no278_a13.b1)MSMg01-278A13.TJ (MSMg01no278_a13.g1)
ACCAG415768AG415769
length712717
length of high quality
(start - end)
204 (375 - 578)288 (75 - 362)
definitionCHROMAT_FILE: MSMg01no278_a13.b1 PHD_FILE: MSMg01no278_a13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:18:16 2005CHROMAT_FILE: MSMg01no278_a13.g1 PHD_FILE: MSMg01no278_a13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:18:16 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCACAGC
ATTTCCGTCTGCTCGCACAAGACCTGTTGTGTACAAGCTCTCGCCAGCAA
AATTTCTCACGCCGAAGGGAGGTTGATATAAATTCCCATCCCTAGCTAAG
GAGCTATTGGCAAATAATAGCTTCAGGAAAGTGGTCTTTAAGAATATAGT
CCCTGGTAGGTTGGCCACACTCCAGTGGAAAGCCACACATTCAAGAAAAT
TTGGGCAGCACAAATTCAACTTGGTGAGTTGAAAGAAAGAAAGAAAGAAA
GGAAGATAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAAA
ATAAAGGAAGGAAGGAACGAACCGAAGGAAGGAAGGAAGGAAGAAAGAAA
GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGA
AAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGGAAGGAAGGAAGGAA
GGAAGAGAAAACACAAAGGTAGATGCACAGGGAAGAGGAATTGATTTGGG
AGGAGTTGGGGGAAGAAGTTGAACAATACACAACCCATGGTATGAAATTC
TCAAATGGTTAATTTTTTTTTATTAATCTGTAAGTGCCAATGAAGTGCAC
CTAAAGATTTTCTAGAAGAAGATGTCTTACTTTTAACACTATTGAAGTCC
ACGAAAATAAGA
CGATGCAGTGCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTGACCGCAAAGGATGGCTGCTTCCCC
CCTCTTCCAGGGAGGAAACCGCCAGGGTGGTAGAAGATTGAGGTTCTTCT
GCAGAGCCAGAGGCACAAACTGGGAGTCCCCAGGAGTCCACAGCAGCCAA
GTCTTTTAAAAGATTTTTCTTGTTCTGGGCAAGGCTCAGCTCACCATCTG
GACACACCTACTAGGAGATGACTCCAGACTGGCAAAGCAAAGAGCAGCGT
GAACTTCATCAGACTGCTTATAGCTGGGGACAATCTTGCGTTTGGTAGCA
AAATTATTCTTTTTTTGTGCCCGANTCGGNCCTCAGCAGTTGAGGCATGA
TGCTGCAGACCTCTCTGTCTCTGTCCGTCTAGTGGTGTGCTGCGTAATGC
TTCAGGCATTCAAACAGATTTATGGTTCTGTAGGGTGCATGAAAGGCCAC
CTTCTCCATGAAGACCTTTGATACAAGACAGATGAGCCAGGACCCTGTGC
TAAGGGTCAACCAAAGAGGACAGGCTGAGTTCTTATCTGACCTCGAAGGG
TGCAGATAATAATGCAGTAATTAGAAGGTGGGTGTAAAAGCCCAATAGTG
CAGACGTTGTATAAGCTAAAAAAAGGGAACTCCAAACATCCTTGGCCTCC
TTCCAGCAGTCCAAACG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no278_a13.g1 MSMg01no278_a13.g1 CHROMAT_FILE:
MSMg01no278_a13.g1 PHD_FILE: MSMg01no278_a13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:18:16 2005
         (288 letters)



>mm_chr2_58336823_58337510
          Length = 688

 Score =  528 bits (273), Expect = e-154
 Identities = 282/285 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgaccgcaaaggatggctgcttcccccctcttccagggaggaaaccgccagggtggtaga 60
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 201 tgaccgcaaaggatggctgcttcccccctcttccagggaggaaacctccagggtggtaga 260

                                                                       
Query: 61  agattgaggttcttctgcagagccagaggcacaaactgggagtccccaggagtccacagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agattgaggttcttctgcagagccagaggcacaaactgggagtccccaggagtccacagc 320

                                                                       
Query: 121 agccaagtcttttaaaagatttttcttgttctgggcaaggctcagctcaccatctggaca 180
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 321 agccaagtcttttaaaagatttttcttgttctgggcaagactcagctcaccatctggaca 380

                                                                       
Query: 181 cacctactaggagatgactccagactggcaaagcaaagagcagcgtgaacttcatcagac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cacctactaggagatgactccagactggcaaagcaaagagcagcgtgaacttcatcagac 440

                                                        
Query: 241 tgcttatagctggggacaatcttgcgtttggtagcaaaattattc 285
           |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgctcatagctggggacaatcttgcgtttggtagcaaaattattc 485


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space:   189441
Effective search space used:   189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)