BAC Information

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BAC

Clone NameMSMg01-278K02
Chromosome2 (Build37)
Map Location 62,056,807 - 62,057,096
singlet/doubletsinglet
Overlap geneSlc4a10
Upstream geneTank, Psmd14, Tbr1, LOC100039274
Downstream geneDpp4, Gcg, Fap, Ifih1, Gca, Kcnh7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-278K02.T7 (MSMg01no278_k02.b1)MSMg01-278K02.TJ (MSMg01no278_k02.g1)
ACCAG416208AG416209
length723739
length of high quality
(start - end)
608 (36 - 643)293 (76 - 368)
definitionCHROMAT_FILE: MSMg01no278_k02.b1 PHD_FILE: MSMg01no278_k02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:19:01 2005CHROMAT_FILE: MSMg01no278_k02.g1 PHD_FILE: MSMg01no278_k02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:19:01 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCATTA
GAGCTTTGATGGAAATTGCATTGATTCTCTAGGTAAGTTTTGATAATAGG
GCAGTTCCCCCAATATTACCTCTGGATAGGTCCTATTGCTTTAGAGCAGT
TTGTGTTCCCAGCAATATTGTATAGAAGATGCAGACATTTCCCATATATT
CCTTTCCTGTCCGCATGTTTAGACACCTTTACTAACAGTATTACTCACCA
GAATGTGATATTTTGTTACAGTTTATGAATGTTTACTGACACTCCTCAGC
TTGTAGTGAGAATCTTGCTCCTGCCTTTCCACCTCTATGCTGGGAATTTT
GCTAGTTTGCTTGCTCGGGTTTTGTACTTTTACTGTTATTATCTAAACAG
CCACTGTCAAACTCAGGGTCATCCAGAGTTTTCCCTATGTTATGTCTTCT
AATGGTTTTTATAGTTTTGTGTTTTTAAAATTTCCAGTTAATCTTGAGTT
ATTTTCCTGAGCAATGAAAAATATATGTTGAAATTTATTTTTTTGTATTG
ATATATAGATATTCCAGAGTTTCATTGAAAGATACTATTATTCATCTACT
TATAGTGCCTTACTCTTTTGTCAGAATTGAGGCATAACAGGCCCTCTGTG
TCTGTGGGTCTATTCTGGTCTCCTCTCTGCTTTCTCAACCTTCTTCATAA
ATTGCTGGAGCTTTATAGTAAGN
CAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCTTTTTACTAAAGAACATTAAATA
GGTGTTTCATGAATTCTTTGAGGATTAAGTTGATGAAAATGCACCCCACT
TGTATTAAAATACACAAAGCAAATTCTTCTACCATTTAACAACAGATTTT
TTTTCTAGAGAAATTAACTCTGCATGTATTATTTAACACTAACTCAGCTT
AACATTTTTAGGAAGTTTTGTTCTTTGATTCTGTTAAATAGGAAGGAGCT
CTATAACTCCTAAATTATGGTTTTGAAGGTGTCAAGATACTCCCTGATAA
GACTTCCACCTTTAATATTTTTGAAAAGAACCACCAAATATATGTAAAGC
AATTCATCTTAAGGAGACAGAAACTATCAAAACTCAATGTTTAATGGCTC
TAGTTATTCTTTTCTCTCAATAATTTTTTTGATTTTTTGAGATTATAATA
TAATTGCCTCATTTCCGTATTCAAATGTATGGTCTCTTTTTTCTTCATTA
GTTGTTATTACATATATCTATGTATGTAATGTATATGCAAATATATTCAT
AAATGATTAAATATAATCTGCTCAGGATGTATAATGTTACTTGCATGTAC
ATTTTTTTGGTTTGTCTTAATTCATATGGGCTTTGCATTTGCAGTCTATT
GAAGAGTTCAGTTGATGTGACTATATACTAATCCTGACG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no278_k02.g1 MSMg01no278_k02.g1 CHROMAT_FILE:
MSMg01no278_k02.g1 PHD_FILE: MSMg01no278_k02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:19:01 2005
         (293 letters)



>mm_chr2_62056607_62057299
          Length = 693

 Score =  530 bits (274), Expect = e-155
 Identities = 286/290 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctttttactaaagaacattaaataggtgtttcatgaattctttgaggattaagttgatg 60
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 tctttttaccaaagaacattaaataggtgtttcatgaattctttgaggattaagttgatg 431

                                                                       
Query: 61  aaaatgcaccccacttgtattaaaatacacaaagcaaattcttctaccatttaacaacag 120
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 aaaatgcgccccacttgtattaaaatacacaaagcaaattcttctaccatttaacaacag 371

                                                                       
Query: 121 attttttttctagagaaattaactctgcatgtattatttaacactaactcagcttaacat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 attttttttctagagaaattaactctgcatgtattatttaacactaactcagcttaacat 311

                                                                       
Query: 181 ttttaggaagttttgttctttgattctgttaaataggaaggagctctataactcctaaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 ttttaggaagttttgttctttgattctgttaaataggaaggagctctataactcctaaat 251

                                                             
Query: 241 tatggttttgaaggtgtcaagatactccctgataagacttccacctttaa 290
           ||||||||||||||  ||||||||||||||||||||||||||||||||||
Sbjct: 250 tatggttttgaaggcatcaagatactccctgataagacttccacctttaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 693
Length adjustment: 9
Effective length of query: 284
Effective length of database: 684
Effective search space:   194256
Effective search space used:   194256
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)