BAC Information

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BAC

Clone NameMSMg01-278N12
Chromosome2 (Build37)
Map Location 3,555,320 - 3,555,584
singlet/doubletsinglet
Overlap genenone
Upstream gene9630050M13Rik, Nmt2, Rpp38, Acbd7, Olah, Meig1, Dclre1c, Suv39h2, Hspa14, Armetl1, LOC100040219
Downstream geneLOC666495, 3110001A13Rik, LOC100040257, LOC100040163, LOC666944, 1700080N15Rik, Frmd4a, EG634452, Prpf18
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-278N12.T7 (MSMg01no278_n12.b1)MSMg01-278N12.TJ (MSMg01no278_n12.g1)
ACCAG416367AG416368
length732724
length of high quality
(start - end)
272 (36 - 307)227 (123 - 349)
definitionCHROMAT_FILE: MSMg01no278_n12.b1 PHD_FILE: MSMg01no278_n12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:19:18 2005CHROMAT_FILE: MSMg01no278_n12.g1 PHD_FILE: MSMg01no278_n12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:19:18 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCACTT
GCTACAAAGAAGGTTTGGGTCACCAAGTCACTACTGGGCTTCCTTGGAGT
AGAGATTTCCCTAAAACTGCAGAGGACCATGGCAAAATTGACTGCTTCAC
TCTGACTTTTGTATGGCTCTCTAGAGCCCTGAGTGATCTCTTGCATGGAA
TGATCTTTTGAGGTGATTTTTAGCTCTAAAATCTATAACTCTGTAAACTA
CTTCATTTGTTATTGTTCATAAAAGTCACTGGCCGCATACTCTATTCTCA
CTTGTTTTATTTAGTATCTGAGAAGTTAATTGAATAGTCTATATTTAGTA
GTTCCCCCNAACTAACCCTGATACCAGCCTTGGGCTGACCTGATACTTAC
TTACATAAATAAAAAAAATGGTACAAATGTCCGGTGCGTCAAATTTCATT
GCCTACTGGCTAAGTTGCTGAGATACTTCACTATCATAGTCATGCATTTC
TGGATTCTCATACGTTTGCTGACCAGTCTCTTACTGTCACAAATTAATCT
AATTCTTGTGACCTATACAAGGCCATTGCACCATTTTGCATTTATTATTT
TTTCGCCACCTCCCCTCCCCCTTTTTAATTACATTATTATTCTGCTACAC
ACTCTTTACTTATTTTATATACATCGATATCTTCCCTCCCTTCCCCCTTA
TAATTTTCTTTTTAATTCCACTTCATCTTTCC
CGATTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACTGACGCGGGTAAAAAGGCCAGC
TGGGATGCCCCCAAAGTTCCCGGACTGAGACTCTATCGATCCACAGGGGC
CGACCCGGTGACCCGGTTCTCTTTGACCCGCCAGGTCCTCAATGTAGGAC
CCCGCGTCCCCATTGGGCCTAATCCCGTGATCACTGACCAGCTACCCCCA
TCCCAACCCGTGCAGATCATGCTCCCCAGGCCTCCTCATCCTCCTCCTTC
AGACACGGTCTCTATTGTACCTGGGGCTCCCCCGCCTTCTCAACAACCTG
TTTACGGTAGATTCCNTGCCAAATNCCGTATAAGGAGTCTACCAAGCACT
CAACCTCTCCAGTCCTGACAAAAAAAAAAAGTGCTGGTTGTGTCTGGTAT
CGGGACCCCCCTACTACGAATGGGTTGCCGTCCTAGGTACCTACTCCTAC
CATACCTCTGCCCCAGCTAACTGCTCCGTGGCCTCCCAACACAAGCTGAC
CCTGTCCGATTTGATTGGACTGGTACTCTGCGTAGGAGTAGTTCCTAAAA
CCCCTCATGTCCTGTGTAATACCCCCCATAACACGAGCGACGGGTCCTAC
TATCTGGTTGCTTCCGCCGGGATCTTCTGGTTTTGTTTACCGGGCTTACT
TCCCTGCCTATCTACTATTGTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no278_n12.b1 MSMg01no278_n12.b1 CHROMAT_FILE:
MSMg01no278_n12.b1 PHD_FILE: MSMg01no278_n12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:19:18 2005
         (272 letters)



>mm_chr2_3555116_3555787
          Length = 672

 Score =  482 bits (249), Expect = e-140
 Identities = 261/265 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccacttgctacaaagaaggtttgggtcaccaagtcactactgggcttccttggag 64
           ||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 205 gaattccacttgctagaaagaaggtttgggtcaccaagccactactgggcttccttggag 264

                                                                       
Query: 65  tagagatttccctaaaactgcagaggaccatggcaaaattgactgcttcactctgacttt 124
           ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tagagatttctttaaaactgcagaggaccatggcaaaattgactgcttcactctgacttt 324

                                                                       
Query: 125 tgtatggctctctagagccctgagtgatctcttgcatggaatgatcttttgaggtgattt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgtatggctctctagagccctgagtgatctcttgcatggaatgatcttttgaggtgattt 384

                                                                       
Query: 185 ttagctctaaaatctataactctgtaaactacttcatttgttattgttcataaaagtcac 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttagctctaaaatctataactctgtaaactacttcatttgttattgttcataaaagtcac 444

                                    
Query: 245 tggccgcatactctattctcacttg 269
           |||||||||||||||||||||||||
Sbjct: 445 tggccgcatactctattctcacttg 469


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 272
Length of database: 672
Length adjustment: 9
Effective length of query: 263
Effective length of database: 663
Effective search space:   174369
Effective search space used:   174369
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)