BAC Information

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BAC

Clone NameMSMg01-278O17
Chromosome2 (Build37)
Map Location 70,029,388 - 70,029,675
singlet/doubletsinglet
Overlap geneMyo3b
Upstream geneSpc25, G6pc2, Abcb11, Dhrs9, Lrp2, Bbs5, Kbtbd10, Fastkd1, Ppig, 4930578N16Rik, Phospho2, LOC433432, Klhl23, Ssb, Mettl5, 4930550G17Rik, Zfp650
Downstream geneLOC100040021, Sp5, 4933404M02Rik, LOC100040068, Gad1, LOC100039766, Gorasp2, Tlk1, Mettl8, 4833418A01Rik, Cybrd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-278O17.T7 (MSMg01no278_o17.b1)MSMg01-278O17.TJ (MSMg01no278_o17.g1)
ACCAG416424AG416425
length731712
length of high quality
(start - end)
288 (63 - 350)287 (72 - 358)
definitionCHROMAT_FILE: MSMg01no278_o17.b1 PHD_FILE: MSMg01no278_o17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:19:23 2005CHROMAT_FILE: MSMg01no278_o17.g1 PHD_FILE: MSMg01no278_o17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:19:23 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXCTGCAGAAATCCGCGGAATTCACAGTC
ATGACACAAAGATGAGGCTTAGCTTGCTTTGCCTTCCTTAATTAGTCCCA
GCCCACTCCCCGGGGAACCTTGCCAGCCCATAAGCTGGTGATGCCCAGCC
TCTCAGGGGGACCTTGCCTCTTCAGTTAAACCTTTCTGGAAAGCCCCTTC
TCCATACTCCACGGGGTGTGTCTCCTGATGATTCCAAATCTAGGCAAATT
GACAATCAGCATTCATCGGCACGGCTTTGTACCTAAATTGCGGAAGACTT
TGGTTTGTCCCATTATGTCTTAGCATCTGTGTCTTTTCTACGGCTTGTTT
ACTCCAGCACCCCCCGCCGCTTTTTTTTTTGGTTTTTTTTTTTGTTTGTT
TGTTTGTTTGAAAGAAAAAAAAAATTTTTTGCGGGGGGGCGCCTTTCCAT
CCTACCCCAAATCCACCCCATCCCTGTTTATTTCCGCCTTTTTCCTCCCC
CTTTTTTTTTTTTTCTTTACCCCCCCCTTTTTTTTTTTCTATTCCTCATA
TTCTCCATTCTTATTTTTTGCGCCCCCCTTTTGTTATTCACCACGCGTCC
CCCCTCCTTCCTTTTTTTTTTTTTTTTCCCCTCCTTCTCCCCCTTTTTTT
TCTTCTTTTTTATTATTTCTATCGCCCCAGACCTCTTTTTACTCTCCCCC
CGCCCCTTTTATTTTCACCTCTTTACTATTT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTTATCAAAGAAATTCTAAACATGCTTGACCCCAAAGGAG
TTTGTATGAGAGTCTGATTTTCCATTTCATTTCCATTTCAAATGCAACGG
AGCTCAGGGTCCTGAAAATTGTTTGTTTGTCTAATCCCTCCTGGACCCAT
GTCATGTCCTTCTGTACAGAAGAGTGGGGAGGTGGGAGGATGAGACTCAG
AGAATGCTACCAAGAGACATGGTGTTGGAAGGTGACTGCGAAGTTAGGGT
CAAGGGAAGACTCAGAGAATGCTAACAAGAGAGGTAGTGCTGGAGAGTGA
AGTCAGGGTTAGTCNTTACCACCCACCCCCCCCCTTCAGCTTGACTTCAT
CGTTCTTCCCCTAACTGCAGAATGAGAGAAATAGCCACAAATCACAGTGA
CTGGCTACAGACCCTTGTAGGTGGACAACGCTCGTGTGGGAGCCGAGAAA
GGACCGCTTCTGAGAGCTGGGACCTACAGGAAGAGACAGAGGGGACAGAG
GAAATGGAAGAGCCAGAGACAAATGTGGCAGTGGCTTGTACCACATTTCA
GAGCATCATGGGGGGGGGGTTGGGGTATGTCCCTCCTCCCTTTCCTTTAT
TTTAATCATACTTATTCTTTTATTTCTTCCCCTTTATTTTTCTGTCCTTC
CTTTCTTCTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no278_o17.g1 MSMg01no278_o17.g1 CHROMAT_FILE:
MSMg01no278_o17.g1 PHD_FILE: MSMg01no278_o17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:19:23 2005
         (287 letters)



>mm_chr2_70029188_70029875
          Length = 688

 Score =  503 bits (260), Expect = e-147
 Identities = 282/290 (97%), Gaps = 5/290 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   aattctaaacatgcttgaccccaaaggagtttgtatgagagtctga-ttt-tccatttca 58
           |||||||||||||||||||||||||||||||||||||||||||||| ||| |  ||||||
Sbjct: 201 aattctaaacatgcttgaccccaaaggagtttgtatgagagtctgagtttgt--atttca 258

                                                                       
Query: 59  tttccatttcaaatgcaacggagctcagggtcctgaaaattgtttgtttgtctaatccct 118
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 tttccatttcaaatgcaacggagctcagggtcctgaaaattgtttgtttgtctaatccct 318

                                                                       
Query: 119 cctggacccatgtcatgtccttctgtacagaagagtggggaggtgggaggatgagactca 178
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct: 319 cctggacccatgtcatgtccttccgtacagaagagtggggaggtgggaggatgggactca 378

                                                                       
Query: 179 gagaatgctaccaagagacatggtgttggaaggtgactgcgaagttagggtcaagggaag 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 gagaatgctaccaagagacatggtgttggaaggtgactgcgaagttagggtcaagggaag 438

                                                             
Query: 239 actcagagaatgctaacaagagag-gtagtgctggagagtgaagtcaggg 287
           |||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct: 439 actcagagaatgctaacaagagagtgaagtgctggagagtgaagtcaggg 488


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 688
Length adjustment: 9
Effective length of query: 278
Effective length of database: 679
Effective search space:   188762
Effective search space used:   188762
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)