BAC Information

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BAC

Clone NameMSMg01-279F19
Chromosome2 (Build37)
Map Location 120,016,315 - 120,168,946
singlet/doubletdoublet
Overlap genePla2g4e, LOC100043635, Pla2g4d, Pla2g4f, Vps39
Upstream geneDnajc17, Zfyve19, Ppp1r14d, Spint1, Rhov, Vps18, LOC100043609, Dll4, Chac1, Inoc1, LOC100043612, Exdl1, 1500003O03Rik, LOC100043307, Oip5, Nusap1, Ndufaf1, LOC625328, LOC100043622, Rtf1, Itpka, Ltk, Rpap1, Tyro3, 6330405D24Rik, LOC625403, Mga, Mapkbp1, Pla2g4b, Spnb5, Ehd4
Downstream geneTmem87a, Ganc, Capn3, Zfp106, Snap23, Lrrc57, Cep27, Stard9, Cdan1, Ttbk2, Ubr1, Tmem62, Rnu3b-ps2, Ccndbp1, Epb4.2, Tgm5, LOC640543, Lcmt2, Adal, Zscan29, D2Ertd435e, Trp53bp1, Mtap1a, Hisppd2a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-279F19.T7 (MSMg01no279_f19.b1)MSMg01-279F19.TJ (MSMg01no279_f19.g1)
ACCAG416746AG416747
length750768
length of high quality
(start - end)		316 (36 - 351)292 (76 - 367)
definitionCHROMAT_FILE: MSMg01no279_f19.b1 PHD_FILE: MSMg01no279_f19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:19:56 2005CHROMAT_FILE: MSMg01no279_f19.g1 PHD_FILE: MSMg01no279_f19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:19:56 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(120,168,635 - 120,168,946)(120,016,315 - 120,016,604)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCACGA
ACTGCCGGTAACGTCCACTGTGCCTGCTGTGCAGGCAGGGTGGGAGCTGG
CACTGTAGCTAGCCTCGAGCCTCCTGGTTAGATCTAGTTAGCCCCGGCTT
GAGCCTCCTGGTTAGATCTAGTTAGCCCCGGCTTGAGCCTCCTGGTTAGA
TCTAGTTAACCCCAGCTTGAGGTTCTCCCCAGGCAGACACTGATGCAGAG
TCCTAGGCCTGCTTATTTGTGCCCACAATTCCACAGCATTCCTGCACTTT
ATCTTGTCTCTTCTAAGGGAACCTTTCCTGCACTTTTTCCAGTTCCTGGG
TGATTTATATTCTTACCACCGCCGACTCATATTGTTTATTGGTTGGTTGG
TTTTCTTTTGTTATTGTTTTGAGACAGGATCTCTAGGTAGCTCTGGATTT
CTTGGAACTTGATAATGTAGACCAGGCTGGCCTTGAACTCACAGAAATCT
GCCTGCCTTTGCCTCCCAAGTGCTAGAACTAAGCCCAGACCTTATTTGTA
TTTTATTTATATAGTTCTTCAAGAATTGTGCTCAGCACTATCGGCTGACA
CTATTGCCTACTCCAGCAGAATTTTGCTGAAAGGACCCTGATATTGCTGT
CTCCTGTGAGGCTATACTAGTGCCTGTCTAATACGGAAGTGTATGTTCCC
ATNTCCTCTATAGGATGGAACAAAGGGCCCCCTATGTAGGTACTAATGAA


CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTAAACAGTTATCTGGAGTGTCAAGC
CTTGACTTTCTTGGGATTGATGCCTTTATCAACAGGCCAAATTTGTCTCA
AGGCTGCCACAACTCAAGATGCTTAAGAGATGTAACTATGTAAGTTACAA
GAGATGTAACTATGACTTAGACCCACCATATATCTGAAGAAAAACAACAC
CATGGCATAATGACTCAGTACGTGAAAGCATATGCCTGAGGAAATAGAGG
TAAAAGAAAGCACTAAAGCAATTAATGGATTTAAGAGGCAAGCCTCTTAA
ATTAGAATCAGGTTGTTATCTGTTTACCACCCCGCGCTTTCCTTCCTGTG
TATTCTCAGGAAATAAAATCTGTTCTGCAGCAAGAGATAGTTAGGACCAG
CAGCAATTAGGAGAGCAGAGGAGGTTAGAAGGTAGAAGGATTAGCAGCCT
CAGAGACACAGAGGGAGAAGGAAGTAGCGGGTGAGTGGCAGGACAGGTTA
GTAGGACAAATAGGAAGACAAACAGTCTTAAGACAGATGGGGACGCACAC
ACACACACACACTCACACATTTACTCACCTGGCTGATAAGGGAACAGACA
CGTGGGCAGGCACACAGGTATGGTCCTCTGTGGCTCACCTTTACTTGAGT
CTGGATCTGAAAGGTGAAGCTTTCGTCCCACTCTGGGGGTAAGCAAGTTG
AAGATGGTTCTGGCCCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no279_f19.b1 MSMg01no279_f19.b1 CHROMAT_FILE:
MSMg01no279_f19.b1 PHD_FILE: MSMg01no279_f19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:19:56 2005
         (316 letters)



>mm_chr2_120168431_120169146
          Length = 716

 Score =  596 bits (308), Expect = e-175
 Identities = 311/312 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccacgaactgccggtaacgtccactgtgcctgctgtgcaggcagggtgggagctg 64
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 gaattccacgaactgcaggtaacgtccactgtgcctgctgtgcaggcagggtgggagctg 457

                                                                       
Query: 65  gcactgtagctagcctcgagcctcctggttagatctagttagccccggcttgagcctcct 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 gcactgtagctagcctcgagcctcctggttagatctagttagccccggcttgagcctcct 397

                                                                       
Query: 125 ggttagatctagttagccccggcttgagcctcctggttagatctagttaaccccagcttg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 ggttagatctagttagccccggcttgagcctcctggttagatctagttaaccccagcttg 337

                                                                       
Query: 185 aggttctccccaggcagacactgatgcagagtcctaggcctgcttatttgtgcccacaat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 aggttctccccaggcagacactgatgcagagtcctaggcctgcttatttgtgcccacaat 277

                                                                       
Query: 245 tccacagcattcctgcactttatcttgtctcttctaagggaacctttcctgcactttttc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 tccacagcattcctgcactttatcttgtctcttctaagggaacctttcctgcactttttc 217

                       
Query: 305 cagttcctgggt 316
           ||||||||||||
Sbjct: 216 cagttcctgggt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 716
Length adjustment: 9
Effective length of query: 307
Effective length of database: 707
Effective search space:   217049
Effective search space used:   217049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no279_f19.g1 MSMg01no279_f19.g1 CHROMAT_FILE:
MSMg01no279_f19.g1 PHD_FILE: MSMg01no279_f19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:19:56 2005
         (292 letters)



>mm_chr2_120016115_120016806
          Length = 692

 Score =  561 bits (290), Expect = e-164
 Identities = 290/290 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   taaacagttatctggagtgtcaagccttgactttcttgggattgatgcctttatcaacag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taaacagttatctggagtgtcaagccttgactttcttgggattgatgcctttatcaacag 260

                                                                       
Query: 61  gccaaatttgtctcaaggctgccacaactcaagatgcttaagagatgtaactatgtaagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gccaaatttgtctcaaggctgccacaactcaagatgcttaagagatgtaactatgtaagt 320

                                                                       
Query: 121 tacaagagatgtaactatgacttagacccaccatatatctgaagaaaaacaacaccatgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tacaagagatgtaactatgacttagacccaccatatatctgaagaaaaacaacaccatgg 380

                                                                       
Query: 181 cataatgactcagtacgtgaaagcatatgcctgaggaaatagaggtaaaagaaagcacta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cataatgactcagtacgtgaaagcatatgcctgaggaaatagaggtaaaagaaagcacta 440

                                                             
Query: 241 aagcaattaatggatttaagaggcaagcctcttaaattagaatcaggttg 290
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aagcaattaatggatttaagaggcaagcctcttaaattagaatcaggttg 490


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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