BAC Information

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BAC

Clone NameMSMg01-279H03
Chromosome2 (Build37)
Map Location 171,597,796 - 171,598,082
singlet/doubletsinglet
Overlap genenone
Upstream geneDok5, LOC668955, LOC100043743
Downstream geneLOC100043744, Cbln4, Mc3r, 2010011I20Rik, Aurka, Cstf1, F730031O20Rik, 2410001C21Rik, A330041C17Rik, 1700029J11Rik, LOC629957, Tcfap2c, LOC100043750
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-279H03.T7 (MSMg01no279_h03.b1)MSMg01-279H03.TJ (MSMg01no279_h03.g1)
ACCAG416808AG416809
length770772
length of high quality
(start - end)
299 (68 - 366)287 (76 - 362)
definitionCHROMAT_FILE: MSMg01no279_h03.b1 PHD_FILE: MSMg01no279_h03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:20:02 2005CHROMAT_FILE: MSMg01no279_h03.g1 PHD_FILE: MSMg01no279_h03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:20:02 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCCTCATACCCCTTTATCACAATGAAGAACAAGTTATGAGAGAGAT
GAGTGGGACAGGTGCGTGTGTGACTGTGTGTATGTGTGTAAGTATGTGTC
TGTGTGTGAATGTGTGTGCGTGTGCGTGTGTGTGAGAGAGAGAGAGAGAG
ACTGACAGAGAGACACAGATACACAGAGAGTCATAGAGAAAGACACACAC
ACACACACACACATACATATATATATATATATATATATATACACACAGAG
AGATAAAGACTAGAGAGAGACAGATGGACACAGAGAGACAGATAGATTCA
GAGAGACAGATGGACTCCCAGAGGGACAGGCGGACACAAAGAGACAGATG
GCAAGAGAGAGAGAGAGATAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGA
GAGAGAGAGAGAGAGAGAAGATACTGATATTTCTGAAGGATTAGAGGCCG
AATACCCTGCCCCTCCAAACATTTTATATTGAATTTCTCAATACAAGGAA
GATATTGGGATGTAAATTCAACTGAATCAAATATAGTAAATATTTTCCTG
TACCTGAAGATTTGGAAACATTGTATAGGAGTCTTACTTTGTTTGAAGAG
AGTCAAGCATTTACAAATCTGAATGTGGTCTGAGAGGATGGCTCACCTAG
GTGAGGGAGCTTGCTGCCTAGCCTGACAACCTGAGTTCCATCCTCGACTC
ATTTGTTGGAAGAGGTAACT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCCTTCCTTGGTCTTTCTGGTTTTT
TAATTAATCAAGAAACAGTCCTGCCCACTGGACTTTTCCAAGCTAGTAGA
GGATTAATGATTCTCAGCGATGCTACCAAGCTCTAACCTCACACCCCAAA
CCCTCCGGCTGTGAAATGAAGGCACCATTGAACAGATATGCTAATGGCCT
GTCTACATTCAAGTCTCAGATTCTGGAGCTGTAATTGCAGTTGAGTGACC
CTGGATTTAATAGACAGGGAATCCTACTGATAAATGGATAAAGTCACTCC
GTAGACATCCTATATTTTATAGCCTACCCCCCTCACACGGCTGTCTGTTG
TGTCTTGTTTGACTGAGAGTCCTGTTTTCGCAGAACAAGGTGAGGGTTGG
AATTATAGGCATACCCACTCATTAGCTTTGGGACCCGTGACCTTGGGGTG
ACTTCGTATCTCACAGCCTGCATCTAGAGGAGGTGATGTTAGGTAAGGCG
TTGTGCAGTTCCTGTGTGTAGTGAGTTAATCCACACGTGCTTAGAGCGTG
TGTCTCAGCAAGTGGTGGATGCCTGGCACAACTTAGCTCAGAGTTTAATC
CTGGGTTCCTGAGGCATGCTGGGAATATTGTCAAAGTTCCTGAATTAGAT
GAAGTTTTTTTTCTTCAGGTTCATGTTTTTCCTGTTTTGGGGACATTTTG
TAGAAAGCATTGTATTCAGTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no279_h03.g1 MSMg01no279_h03.g1 CHROMAT_FILE:
MSMg01no279_h03.g1 PHD_FILE: MSMg01no279_h03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:20:02 2005
         (287 letters)



>mm_chr2_171597596_171598282
          Length = 687

 Score =  524 bits (271), Expect = e-153
 Identities = 283/287 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tccttccttggtctttctggttttttaattaatcaagaaacagtcctgcccactggactt 60
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 487 tccttccttggtctttctggttttttaattaatcaagaaacagtcctggccactggactt 428

                                                                       
Query: 61  ttccaagctagtagaggattaatgattctcagcgatgctaccaagctctaacctcacacc 120
           |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 427 ttccaagcaagtagaggattaatgattctcagcgacgctaccaagctctaacctcacacc 368

                                                                       
Query: 121 ccaaaccctccggctgtgaaatgaaggcaccattgaacagatatgctaatggcctgtcta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 ccaaaccctccggctgtgaaatgaaggcaccattgaacagatatgctaatggcctgtcta 308

                                                                       
Query: 181 cattcaagtctcagattctggagctgtaattgcagttgagtgaccctggatttaatagac 240
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 307 cattcaagtctcagattctggatctgtaattgcagttgagtgaccctggatttaatagac 248

                                                          
Query: 241 agggaatcctactgataaatggataaagtcactccgtagacatccta 287
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 agggaatcctactgataaatggataaagtcactccgtagacatccta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)