Query= MSMg01no279_i06.b1 MSMg01no279_i06.b1 CHROMAT_FILE:
MSMg01no279_i06.b1 PHD_FILE: MSMg01no279_i06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:20:07 2005
(681 letters)
>mm_chr2_78224462_78225545
Length = 1084
Score = 1154 bits (597), Expect = 0.0
Identities = 655/677 (96%), Gaps = 7/677 (1%)
Strand = Plus / Minus
Query: 5 gaattcaaagaatgttttagcggagggtagagggctaaaggaagaagacctctgaaatat 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 944 gaattcaaagaatgttttagcggagggtagagggctaaaggaagaagacctctgaaatat 885
Query: 65 atggagctcaataaatgtggggaatgtaaaggaaggttaacgcattgaccaaacaagcaa 124
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 884 atggagctcaataaatgtggggaatgtaaaggaaggttaacacattgaccaaacaagcaa 825
Query: 125 acaaacaacagtttagagacagctatagaatcagaacaccaggtgttagctttgcatgcc 184
||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 824 aca---aacagtttagagacagctatggaatcagaacaccaggtgttagctttgcatgcc 768
Query: 185 tcatatctgtgtccttgaacaagctgcttaccttctttgtgcctcagtttccccatcttc 244
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 767 tcatatctgtgtccttgaacaagctgcataccttctttgtgcctcagtttccccatcttc 708
Query: 245 tatattaaaatatctggatgctatagtatgaatctgatttgtctctcaggatcccatgta 304
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 707 tatattaaagtatctggatgctatagtatgaatctgatttgtctctcaggatcccatgta 648
Query: 305 ccaagactcagtctccaacttgtggtaagatg---tggagcctttagaagacagtaccac 361
|||||||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct: 647 ccaagactcagtctccaacttgtggtaagaagtcatggagcctttagaagacagtaccac 588
Query: 362 atacacagaagttgggtgacaaggtgatgcccttgaaggcgatcctaggaccccagtccc 421
||| |||||||||||| |||| |||||||||||||||||| |||||||||||||||||||
Sbjct: 587 ataaacagaagttgggagacagggtgatgcccttgaaggctatcctaggaccccagtccc 528
Query: 422 ttggttttcctctttgctcccatcatgatgttctgccttcacagccaacccaacaaagcc 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 ttggttttcctctttgctcccatcatgatgttctgccttcacagccaacccaacaaagcc 468
Query: 482 tcatgaccatggcttaaaatactcaaaattgtgaggaaaagtaagtctctctttttccct 541
|||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 467 tcatgaccatggcttagaatgctcaaaattgtgaggaaaagtaagtctctctttttccct 408
Query: 542 ttaaattgcctatatcaggtatttattccagtaacaaaaatgcttttgttgaagtactta 601
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 ttaaattgcctatctcaggtatttattccagtaacaaaaatgcttttgttgaagtactta 348
Query: 602 tttctctaaggttttttgtttttgttttgttttgttttgctttgctttgctttggttttg 661
|||||||||||||||||||||||||| ||||| ||||||||||||||||||||| |||||
Sbjct: 347 tttctctaaggttttttgtttttgttctgtttcgttttgctttgctttgctttgtttttg 288
Query: 662 ttttctttcttt-tttt 677
|||||||||||| ||||
Sbjct: 287 ttttctttctttctttt 271
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 681
Length of database: 1084
Length adjustment: 10
Effective length of query: 671
Effective length of database: 1074
Effective search space: 720654
Effective search space used: 720654
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no279_i06.g1 MSMg01no279_i06.g1 CHROMAT_FILE:
MSMg01no279_i06.g1 PHD_FILE: MSMg01no279_i06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:20:07 2005
(670 letters)
>mm_chr2_78149047_78150116
Length = 1070
Score = 1180 bits (610), Expect = 0.0
Identities = 654/669 (97%), Gaps = 1/669 (0%)
Strand = Plus / Plus
Query: 2 gagaaacatgttggaaaagacaaatatcaaaatggaaaacgtttattcaatgtggtaact 61
||||||||||||| ||||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct: 202 gagaaacatgttgaaaaaggcaaatatcaaaatggaaaatgtttattcaatgtggtaact 261
Query: 62 ttgtatcatttgcctctaattaacagaaacagaaaattgtgctccctcattcttcaagtt 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 ttgtatcatttgcctctaattaacagaaacagaaaattgtgctccctcattcttcaagtt 321
Query: 122 cttgaagttagtgggtaaaggggcctctgtgtggcaaaccattggtttaaaggtgtccct 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 cttgaagttagtgggtaaaggggcctctgtgtggcaaaccattggtttaaaggtgtccct 381
Query: 182 acatggaaaatgatggggtaaagggggccctacatggaaaaccatggtgaagatatgagc 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 acatggaaaatgatggggtaaagggggccctacatggaaaaccatggtgaagatatgagc 441
Query: 242 acattaaaaaaaggtccagcaaaaagaaatcggagtcatggccaggagatgatattcctg 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 acattaaaaaaaggtccagcaaaaagaaatcggagtcatggccaggagatgatattcctg 501
Query: 302 tcaacagatactcataggaagtgactaggtattcccaggtacagtgatataaggcagcct 361
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 502 tcaacagatactcataggaagtgactgggtattcccaggtacagtgatataaggcagcct 561
Query: 362 tagaagtggctgggaaggaaggagacatagcttcctagagggctttgtggttctctctcc 421
||||||||||||||||||||||||||| || ||| |||||||||||||||||||||||||
Sbjct: 562 tagaagtggctgggaaggaaggagacagagattcttagagggctttgtggttctctctcc 621
Query: 422 atgcggtggtttgaatgggaatggcccccatagactgaaataacagaaggcttggtctgc 481
|||| |||||||||||| |||||||||| |||||||||||||| ||||||||||||||||
Sbjct: 622 atgctgtggtttgaatgagaatggcccc-atagactgaaataatagaaggcttggtctgc 680
Query: 482 acttagtggaactgtttgggagagattaggagtagtggtggccttgttttaggaagtgtt 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 acttagtggaactgtttgggagagattaggagtagtggtggccttgttttaggaagtgtt 740
Query: 542 gcagcggagggtgggctttgaggtttcaaaagcccaggccaggccagaccaggtgtccct 601
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tcagcggagggtgggctttgaggtttcaaaagcccaggccaggccagaccaggtgtccct 800
Query: 602 ctgcctgcaaagccctcagctacttcagcagtaccatgcctgcctgctggnaccaaagga 661
||||||||||||| ||||||||||||||||| |||||||||||||||||| |||||||||
Sbjct: 801 ctgcctgcaaagctctcagctacttcagcagcaccatgcctgcctgctgggaccaaagga 860
Query: 662 gccaacaga 670
|||||||||
Sbjct: 861 gccaacaga 869
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 670
Length of database: 1070
Length adjustment: 10
Effective length of query: 660
Effective length of database: 1060
Effective search space: 699600
Effective search space used: 699600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
