BAC Information

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BAC

Clone NameMSMg01-279K04
Chromosome2 (Build37)
Map Location 61,233,936 - 61,234,246
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039176, Pla2r1, Itgb6, Rbms1, ENSMUSG00000075325
Downstream geneTank, Psmd14, Tbr1, LOC100039274, Slc4a10, Dpp4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-279K04.T7 (MSMg01no279_k04.b1)MSMg01-279K04.TJ (MSMg01no279_k04.g1)
ACCAG416945AG416946
length757753
length of high quality
(start - end)
315 (46 - 360)586 (77 - 662)
definitionCHROMAT_FILE: MSMg01no279_k04.b1 PHD_FILE: MSMg01no279_k04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:20:17 2005CHROMAT_FILE: MSMg01no279_k04.g1 PHD_FILE: MSMg01no279_k04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:20:17 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCATGGTCTACTTAATAATTAAAGCAATTCATCTTCAGGTACATCT
GATCCATTTTGCCATTGCAACACAAAATTCTAGGGGGATAGAAATGCCTG
TAGAGAATATCTGTTGCATAAACACCAATATGCAGAGTAATCTGGTGACC
TTTTGAGATGTATCAACTACGTGGTTATTAAAAATCTGATGCTGGGGGCT
AGAGAGATGGATCAGCAGTTAAGAGCACTGAGTGCTGCTCTTCCAGAGGT
CCTGAGTTCAATTCCCAACAACCACATAGTGGCTCTCAACCATTTGTAAT
TTTTGAAGAGAGTGTTTGTGGACTACCATACCTAAAATAAATAAATAAAT
CTTAAAACAAAAGAACTGATGCTAATCTGATGATGGGAAACCTGTCTGGA
AAAGACTCGGTCACCAGTGCAGTGTCCCATGGAGACAGGCTTCTACTCTG
CAGGACACTAATGACTGTGGCTGTGCAAGTCTTTGTTTTGCCCAGAAGGG
CAAATTTAAAAAAAAAATTAAAATGATAAGTTAGTCACAGAGAAGGCTAA
AGAATTCTGAAATAATACAGTATGTCATTTGATCACAGGTTTGTTCTGTC
CAGTTTGGTAGCCAGACGGCATGTGCTACCTGGTAACTGAAATGAAGTGA
GTCTCCCTGAGAGGCACTCAAAGAGTGAAATCTAAGTATGATTCTGAGAC
TCAGTAT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCCTGGAGGGGCACAACAGCAGATT
TGAACTGGCAGAAGAAATAATTAATGAACTTGAAGACACATTGATAGAAA
GGCCAGGCATGGTGGATGCATACATAGTCACTTGGGATTTGGAGTTAGGA
CAATCATGAATGGGAGGGCTTTGGCAGGCCCAAGCATGGCAAACGTGGCA
CAGGCAGGCCTCCCCTTCTCTCCTCCTCTCTTCCTTACTAAACCATTAGA
TTCTATTCCTAAAGCTGGCCACCAAGGTCTATTTCCTTTTTTTGACCATT
TTCTTACGCTGACTCATTCCCAAAGTTGGTCACTAAGGTCCAATTATCAA
AACATCAAGGTCCAGCAATCAATCCCTCATTTGACTATCCTAATTAAAAT
ACCCAATCAGAACTGACCAACACCTCCCAGATCATTTCAATACTTACCTC
TCCCCCACCACCCCATCTTAAAATTAATACTAGCAAAACTGTAGTTGCTG
CTCTTCCTGCCCAATTCAGATTCAGTCATCTTGTCTCTTTGTCTTGCTTA
ATAAAGGATCTCTTAGTGTTTTGTTTGTGATTGGAAATTGGTGTTTGGGT
GTGGTCTGTGCCTAATTCGAGATACAGAGGGGAGCACTCTGTATGAGGGT
CCTTTCAGGAATTTCAGGCAATCCTTTCAAAGTTTGAGGCTCTGTGAAAC
CCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no279_k04.b1 MSMg01no279_k04.b1 CHROMAT_FILE:
MSMg01no279_k04.b1 PHD_FILE: MSMg01no279_k04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:20:17 2005
         (315 letters)



>mm_chr2_61233848_61234562
          Length = 715

 Score =  586 bits (303), Expect = e-172
 Identities = 309/311 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccatggtctacttaataattaaagcaattcatcttcaggtacatctgatccattt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 gaattccatggtctacttaataattaaagcaattcatcttcaggtacatctgatccattt 340

                                                                       
Query: 65  tgccattgcaacacaaaattctagggggatagaaatgcctgtagagaatatctgttgcat 124
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 tgccattgcaacacgaaattctagggggatagaaatgcctgtagagaatatctgttgcat 280

                                                                       
Query: 125 aaacaccaatatgcagagtaatctggtgaccttttgagatgtatcaactacgtggttatt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 aaacaccaatatgcagagtaatctggtgaccttttgagatgtatcaactacgtggttatt 220

                                                                       
Query: 185 aaaaatctgatgctgggggctagagagatggatcagcagttaagagcactgagtgctgct 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 219 aaaaatctgatgctgggggctagagagatggatcagcagttaagagcactgagtgctgct 160

                                                                       
Query: 245 cttccagaggtcctgagttcaattcccaacaaccacatagtggctctcaaccatttgtaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 159 cttccagaggtcctgagttcaattcccaacaaccacatagtggctctcaaccatttgtaa 100

                      
Query: 305 tttttgaagag 315
           | |||||||||
Sbjct: 99  tatttgaagag 89


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 715
Length adjustment: 9
Effective length of query: 306
Effective length of database: 706
Effective search space:   216036
Effective search space used:   216036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)