BAC Information

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BAC

Clone NameMSMg01-279K13
Chromosome2 (Build37)
Map Location 155,739,526 - 155,897,158
singlet/doubletdoublet
Overlap gene2410003P15Rik, Gdf5, Cep250, Ergic3, Fer1l4, Spag4
Upstream genea, Ahcy, Itch, LOC100043877, LOC668931, Dynlrb1, Map1lc3a, Cdc91l1, Trp53inp2, Ncoa6, LOC668938, Ggtl3, Acss2, Gss, Myh7b, Trpc4ap, Edem2, Procr, Mmp24, Itgb4bp, 5530400B04Rik
Downstream geneCpne1, Rbm12, Nfs1, 2010100O12Rik, Rbm39, Phf20, Scand1, LOC632394, LOC628707, LOC669792, 2900097C17Rik, LOC668941, Epb4.1l1, 0610011L14Rik, Dlgap4, Myl9, LOC433546, Tgif2, LOC100043677, 1110008F13Rik, Sla2, LOC100043880, Ndrg3, LOC668943, Dsn1, 9830001H06Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-279K13.T7 (MSMg01no279_k13.b1)MSMg01-279K13.TJ (MSMg01no279_k13.g1)
ACCAG416963AG416964
length748742
length of high quality
(start - end)		559 (64 - 622)666 (77 - 742)
definitionCHROMAT_FILE: MSMg01no279_k13.b1 PHD_FILE: MSMg01no279_k13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:20:18 2005CHROMAT_FILE: MSMg01no279_k13.g1 PHD_FILE: MSMg01no279_k13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:20:18 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(155,896,789 - 155,897,158)(155,739,526 - 155,740,190)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXCCTTGGAGGGAGCAAAAAAGTAATGCAGGAAAAGTTT
TAAAGATTGTTTCTTATGGCGCAACTGCCCTTTGTGTATGTGTACTGCGT
GTGGACTGAAACCGAGACCGTGGAGGGTTTTTGTTGTTTGTATTTTCTGG
GCGTTGGTGTTTTGTGCGCATGCGTCTCTGTGTGAGGGTGTCAGATCCCT
TGGAACTGGAGTTACGGTGGGAGCTGCCGTGTGGGGGCTGGGCATTGTAT
CCTGGTCCTCTGAAAGAGTAGCCTGAGCTCTTAACCACTGAGTCATCTCT
CCAGCTAAAGAACCATGGACCCTCACATACTAGGCAAACCTGTGCTCTGC
CAGCTCCATCACTAGGCTACACTGCCAGCAACTCTTTTTTTTTTTTTTTT
TGGTTTTTTGAGACAGGGTTCCTGGCTGTCCTGGAACTCACTCGAACTCA
GAAATCCGCCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGCTGCGCCA
CCACGCCCGGCCAGCAAGTCCTTTTTATTATTTTTTTTCATCTCCATTTT
TTGGAGACAGTTTTACTATGTAGACCATGCTGGCCTCGCATTGAGAGATC
CATCTGCCTCTGTCTCCCAAATGCTGCGATTCATGGTATGTCCTACCATG
TCCAGCTTTTACTTCCATTTCACGGTTTTTGTAGCCAGTTTTCATGTA

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGGGTCCAAATTCCCAGTAACACT
TTAACTGCCTTTACAATTAAACGGGCCAGGGGTGGGAGCTGGGCATGGTG
GCACATGTCTTTAATCCCAGCACTCAGGATGCAGAGGGGCAGAAGTTTGA
GGCCAGCCTGGTCTAGATACATAGAAAGTTTCAGACAGGACACTGTCTCA
AGGAAAAAAAAAAGATGGGAGGGAGGGTTAATCCTTCAATTCTGGTTTAT
TCCAAAAAGAGAAGGAATAAATAAAATTAACAATGATTTTCCTGTTTCAT
CTTAATAAAGGAATAATAAGTTTCTCATTGTGGAATAGTACTATTTGAAT
TTCTTTCCAAACAAGGATATTAAAAGATTAGTCAGACTTATGCTTTAATT
CTCAAGTACCAAGCAGGCTTTGTGAAATACAGACTAAACACAGACCCCTC
CCATGACATCACATACATCAGTGAAATGGCCCATCTAGGACGCAGAGCAC
TTAAATTGCCTCAGAGGACGGGGTGGGTGCAGCCTGAGTTGGGCTTCTCC
CTAGTCAGTGTCAGGTGAGGCATCTTTCCTCGGCCCCACAGCTCCACAGT
GGTCAATGGACTCCTTCTCTCTACTTCACTCAACTGCTGAAAATGTGGGA
CGTGCCAGGACAACGCCTTCCACTGCCCTGGTCACCCACACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no279_k13.b1 MSMg01no279_k13.b1 CHROMAT_FILE:
MSMg01no279_k13.b1 PHD_FILE: MSMg01no279_k13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:20:18 2005
         (559 letters)



>mm_chr2_155896789_155897747
          Length = 959

 Score =  708 bits (366), Expect = 0.0
 Identities = 369/370 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccttggagggagcaaaaaagtaatgcaggaaaagttttaaagattgtttcttatggcgca 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 370 ccttggagggagcaaaaaagtaatgcaggaaaagttttaaagattgtttcttatggcgga 311

                                                                       
Query: 61  actgccctttgtgtatgtgtactgcgtgtggactgaaaccgagaccgtggagggtttttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 actgccctttgtgtatgtgtactgcgtgtggactgaaaccgagaccgtggagggtttttg 251

                                                                       
Query: 121 ttgtttgtattttctgggcgttggtgttttgtgcgcatgcgtctctgtgtgagggtgtca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 ttgtttgtattttctgggcgttggtgttttgtgcgcatgcgtctctgtgtgagggtgtca 191

                                                                       
Query: 181 gatcccttggaactggagttacggtgggagctgccgtgtgggggctgggcattgtatcct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 gatcccttggaactggagttacggtgggagctgccgtgtgggggctgggcattgtatcct 131

                                                                       
Query: 241 ggtcctctgaaagagtagcctgagctcttaaccactgagtcatctctccagctaaagaac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130 ggtcctctgaaagagtagcctgagctcttaaccactgagtcatctctccagctaaagaac 71

                                                                       
Query: 301 catggaccctcacatactaggcaaacctgtgctctgccagctccatcactaggctacact 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70  catggaccctcacatactaggcaaacctgtgctctgccagctccatcactaggctacact 11

                     
Query: 361 gccagcaact 370
           ||||||||||
Sbjct: 10  gccagcaact 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 559
Length of database: 959
Length adjustment: 10
Effective length of query: 549
Effective length of database: 949
Effective search space:   521001
Effective search space used:   521001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no279_k13.g1 MSMg01no279_k13.g1 CHROMAT_FILE:
MSMg01no279_k13.g1 PHD_FILE: MSMg01no279_k13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:20:18 2005
         (666 letters)



>mm_chr2_155739326_155740391
          Length = 1066

 Score = 1270 bits (657), Expect = 0.0
 Identities = 663/665 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agggtccaaattcccagtaacactttaactgcctttacaattaaacgggccaggggtggg 60
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 201 agggtccaaattcccagtaacactttaactgcctttacaattaaaggggccaggggtggg 260

                                                                       
Query: 61  agctgggcatggtggcacatgtctttaatcccagcactcaggatgcagaggggcagaagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agctgggcatggtggcacatgtctttaatcccagcactcaggatgcagaggggcagaagt 320

                                                                       
Query: 121 ttgaggccagcctggtctagatacatagaaagtttcagacaggacactgtctcaaggaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttgaggccagcctggtctagatacatagaaagtttcagacaggacactgtctcaaggaaa 380

                                                                       
Query: 181 aaaaaaagatgggagggagggttaatccttcaattctggtttattccaaaaagagaagga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaaaaaagatgggagggagggttaatccttcaattctggtttattccaaaaagagaagga 440

                                                                       
Query: 241 ataaataaaattaacaatgattttcctgtttcatcttaataaaggaataataagtttctc 300
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 441 ataaataaaattaacaatgattttcctgtttcatcttaataaaggaaaaataagtttctc 500

                                                                       
Query: 301 attgtggaatagtactatttgaatttctttccaaacaaggatattaaaagattagtcaga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 attgtggaatagtactatttgaatttctttccaaacaaggatattaaaagattagtcaga 560

                                                                       
Query: 361 cttatgctttaattctcaagtaccaagcaggctttgtgaaatacagactaaacacagacc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cttatgctttaattctcaagtaccaagcaggctttgtgaaatacagactaaacacagacc 620

                                                                       
Query: 421 cctcccatgacatcacatacatcagtgaaatggcccatctaggacgcagagcacttaaat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cctcccatgacatcacatacatcagtgaaatggcccatctaggacgcagagcacttaaat 680

                                                                       
Query: 481 tgcctcagaggacggggtgggtgcagcctgagttgggcttctccctagtcagtgtcaggt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tgcctcagaggacggggtgggtgcagcctgagttgggcttctccctagtcagtgtcaggt 740

                                                                       
Query: 541 gaggcatctttcctcggccccacagctccacagtggtcaatggactccttctctctactt 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gaggcatctttcctcggccccacagctccacagtggtcaatggactccttctctctactt 800

                                                                       
Query: 601 cactcaactgctgaaaatgtgggacgtgccaggacaacgccttccactgccctggtcacc 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 cactcaactgctgaaaatgtgggacgtgccaggacaacgccttccactgccctggtcacc 860

                
Query: 661 cacac 665
           |||||
Sbjct: 861 cacac 865


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 666
Length of database: 1066
Length adjustment: 10
Effective length of query: 656
Effective length of database: 1056
Effective search space:   692736
Effective search space used:   692736
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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