Query= MSMg01no279_o12.b1 MSMg01no279_o12.b1 CHROMAT_FILE:
MSMg01no279_o12.b1 PHD_FILE: MSMg01no279_o12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:20:37 2005
(591 letters)
>mm_chr2_13023497_13024483
Length = 987
Score = 1025 bits (530), Expect = 0.0
Identities = 571/587 (97%), Gaps = 4/587 (0%)
Strand = Plus / Plus
Query: 5 gaattcttccccagcaggtctgcaaaagtcatagaggcatacatgagggcaatccaaaca 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttccccagcaggtctgcaaaagtcatagaggcatacatgagggcaatccaaaca 264
Query: 65 gtggattgcaaacatgtttccatgatccaatcaattgcatctcttagtatacgttgtatt 124
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gtggattgcaaacatgtttccttgatccaatcaattgcatctcttagtatacgttgtatt 324
Query: 125 taaaacagatgggagttattcctatgtatataatgcttagtatgaaaagctgactgaaat 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 taaaacagatgggagttattcctatgtatataatgcttagtatgaaaagctgactgaaat 384
Query: 185 cctgtatcaccttccagtgggttttttttttttttaaacaaaacaaaacaaaaatgattt 244
||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct: 385 cctgtatcaccttccagtggg----ttttttttttaaacaaaacaaagcaaaaatgattt 440
Query: 245 tcacacacaaccaagtgcttcgtaaaagcctggccttgttgcctctgcaccttaggcttt 304
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 441 tcacacacaaccaagtgcttcgtagaagcctggccttgttgcctctgcaccttaggcttt 500
Query: 305 gcatttcttctctgcgtccactgcattaaatggtgccccacttgcagggataaaacaaac 364
|||||||||| ||| ||||||||||||||||||||| | |||||||||||||||||||||
Sbjct: 501 gcatttcttcactgtgtccactgcattaaatggtgctcaacttgcagggataaaacaaac 560
Query: 365 atgtacagagacatgggttttgttactacgtggcagattgccactcccgatcaaagagta 424
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 561 atgtacagagacatgggttttgttactatgtggcagattgccactcccgatcaaagagta 620
Query: 425 caagatgtgaaatgaggctcagagacatcttatgtctttcacgtaatatttggaggcact 484
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 621 caagatgtgaaatgaggctcagagacatcttatgtctttcacgtaatatttggaggcatt 680
Query: 485 gagtccacaggtgttatcaagcgttggctgtgctctgtcatctgccgggactaagtcaag 544
|||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct: 681 gagtccacaggtgttatcaagcattggctgtgctctgtcatctgccaggactaagtcaag 740
Query: 545 gttatgaattgttattttgattttcctttctgtttggncctttcccg 591
||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 741 gttatgaattgttattttgattttcctttctgtttggtcctttcccg 787
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 591
Length of database: 987
Length adjustment: 10
Effective length of query: 581
Effective length of database: 977
Effective search space: 567637
Effective search space used: 567637
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no279_o12.g1 MSMg01no279_o12.g1 CHROMAT_FILE:
MSMg01no279_o12.g1 PHD_FILE: MSMg01no279_o12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:20:37 2005
(280 letters)
>mm_chr2_13189582_13190261
Length = 680
Score = 371 bits (192), Expect = e-107
Identities = 217/226 (96%), Gaps = 2/226 (0%)
Strand = Plus / Minus
Query: 55 ttctcttctcttctcttctcttctcttctcttctcttctcttctcttctcttctgcttag 114
|||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 532 ttctct--tcttctcttctcttctcttctcttctcttctcttctcttctcttttgcttag 475
Query: 115 gtttatctgcagctatgacatttagaatgcaagcatcctgattaaacacaggaaaccatt 174
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 gtttatctgcagctatgacatttagaatgcaagcatcctgattaaacacaggaaaccatt 415
Query: 175 aacttatatgcaaagagaatgactgtgtcttgtaccctaagctttcttttttttgcattt 234
|||||| ||||| ||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 414 aacttacatgcagagagaatgactgtgtcttgtaccctaagctttcctttttttgcattt 355
Query: 235 actaattttttttcttaaaaataatgtaatgatttggctttgaaga 280
|||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 354 actaatttaacttcttaaaaataatgtaatgatttggctttgaaga 309
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 44
Number of extensions: 19
Number of successful extensions: 19
Number of sequences better than 10.0: 1
Number of HSP's gapped: 16
Number of HSP's successfully gapped: 1
Length of query: 280
Length of database: 680
Length adjustment: 9
Effective length of query: 271
Effective length of database: 671
Effective search space: 181841
Effective search space used: 181841
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
