Query= MSMg01no279_p01.b1 MSMg01no279_p01.b1 CHROMAT_FILE:
MSMg01no279_p01.b1 PHD_FILE: MSMg01no279_p01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:20:40 2005
(556 letters)
>mm_chr2_159362644_159363599
Length = 956
Score = 944 bits (488), Expect = 0.0
Identities = 538/556 (96%), Gaps = 5/556 (0%)
Strand = Plus / Minus
Query: 1 agacatacacatttgcccccttcagaatgatgggaattctgggaagtaggaacaccaact 60
|||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||
Sbjct: 553 agacatacacatttgcccccttcaaaatgatgggaattctgggaagtaggaagaccaact 494
Query: 61 cagtggctcttcaggttcagagaatagttcgaaatgcaccaaaaaatttcagtcaatgtt 120
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 493 cagtggctcttcaggttcagagagtagttcgaaatgcaccaaaaaatttcagtcaatgtt 434
Query: 121 tggagtttggatcctacctgaagagtggaaagtggaaggctttgctttcaaccttgtgtc 180
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 tggagtttggatccgacctgaagagtggaaagtggaaggctttgctttcaaccttgtgtc 374
Query: 181 attgacaggaatttctggtctctatgtttgtggggctgtaagcctgagtttctcactgat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 attgacaggaatttctggtctctatgtttgtggggctgtaagcctgagtttctcactgat 314
Query: 241 ggaagactatgctgatttcattgccatggcaacccacaccatcaatcatccaaagatgaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 ggaagactatgctgatttcattgccatggcaacccacaccatcaatcatccaaagatgaa 254
Query: 301 ccattgagatgaaactcacaatcttatatggcttagtatggaggtgattcccctcccaca 360
|||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct: 253 ccattgagatgaaactcacaatcttatacagcttagtatggaggtgattcccc---caca 197
Query: 361 cacacacacacacctacccactgttgctatcttatactggtcaaagtcagagcttctgcc 420
|| ||| | ||||||||||||||||||||||| |||||||||||||||| |||||||||
Sbjct: 196 tacccac-c-cacctacccactgttgctatcttgtactggtcaaagtcagggcttctgcc 139
Query: 421 tcactcaagggaaaggatcactaagacacagatctaaggggtggaaatccctgtgccatc 480
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 138 tcactcaagggaaaggatcactaagacacagatctaaggggaggaaatccctgtgccatc 79
Query: 481 tatagaactgccttccatggtctttctgcccagtggcttccataacacactctgctggct 540
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78 tatagaactgccttacaaggtctttctgcccagtggcttccataacacactctgctggct 19
Query: 541 aattttatgtcaactt 556
||||||||||||||||
Sbjct: 18 aattttatgtcaactt 3
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 556
Length of database: 956
Length adjustment: 10
Effective length of query: 546
Effective length of database: 946
Effective search space: 516516
Effective search space used: 516516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no279_p01.g1 MSMg01no279_p01.g1 CHROMAT_FILE:
MSMg01no279_p01.g1 PHD_FILE: MSMg01no279_p01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:20:40 2005
(501 letters)
>mm_chr2_159170651_159171551
Length = 901
Score = 909 bits (470), Expect = 0.0
Identities = 493/501 (98%)
Strand = Plus / Plus
Query: 1 agcactgattttagaagtcccgagaggagaaggtagttcaacaagagatagatgatgctg 60
|||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct: 201 agcactgattttagaagtcctgagaggagaaggtagttcaacaagagatggatgatgctg 260
Query: 61 ctggtccaagtcactcagagatacctggagaagagaggagcaaccagaagcagatgacag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctggtccaagtcactcagagatacctggagaagagaggagcaaccagaagcagatgacag 320
Query: 121 cctagaaaggatgctaggggtgaaagacaggaaaggagaagagggaacagatctaaaggg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cctagaaaggatgctaggggtgaaagacaggaaaggagaagagggaacagatctaaaggg 380
Query: 181 agcagagggagacatcatcagacaacagaattactcctgatggctctggggagagtaagt 240
| ||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct: 381 aacagagggagacatcatcagacaacagaattactcctgatggctctggggagggcaagt 440
Query: 241 tctagagttgtagagcacttacaaaacaaagcagcacccacaaatatcttagtaattttt 300
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tctagagttgtaaagcacttacaaaacaaagcagcacccacaaatatcttagtaattttt 500
Query: 301 ctttttaatcttacacaacttgggggtgtggcatggcaaacttganaggaagagtaagct 360
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 501 ctttttaatcttacacaacttgggggtgtggcatggcaaacttgaaaggaagagtaagct 560
Query: 361 tctaaaaggaataagaaattcttttagctgcatacccctgtcctctattgaagatgttgg 420
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 561 tctaaaaggaataagaaattcttttagctgcacacccctgtcctctattgaagatgttgg 620
Query: 421 caaactcgagccaacttaacttctaaggaactttcagtaacaatctgtgatcaaaaattt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 caaactcgagccaacttaacttctaaggaactttcagtaacaatctgtgatcaaaaattt 680
Query: 481 ctcaattgttttcatataaga 501
|||||||||||||||||||||
Sbjct: 681 ctcaattgttttcatataaga 701
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 501
Length of database: 901
Length adjustment: 10
Effective length of query: 491
Effective length of database: 891
Effective search space: 437481
Effective search space used: 437481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
