Query= MSMg01no280_b09.b1 MSMg01no280_b09.b1 CHROMAT_FILE:
MSMg01no280_b09.b1 PHD_FILE: MSMg01no280_b09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:20:51 2005
(712 letters)
>mm_chr2_137302262_137303374
Length = 1113
Score = 1201 bits (621), Expect = 0.0
Identities = 677/709 (95%), Gaps = 23/709 (3%)
Strand = Plus / Plus
Query: 5 gaattccccttgaact-acatgcttacacaaagtcagattttaagccattttcttgaaaa 63
|||||||||||||||| | |||||||| ||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccccttgaactaaaatgcttacgcaaagtcagattttaagccattttcttgaaaa 264
Query: 64 ttttgtttattgtaatctaatttttcacaatgtggcctatttatgcatctcatttacatt 123
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 265 ttttgtttattgtaatctaatttttcacaatgtggcctatttatgcatcttatttacat- 323
Query: 124 ttatttgtttaaaattttatattaaatgcatgctatttatatcatttcctctcttcccct 183
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ---tttgtttaaaattttatattaaatgcatgctatttatatcatttcctctcttcccct 380
Query: 184 tccaactcttcttttatatctcactattctctctcaaattatggcttctttcttttgtta 243
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tccaactcttcttttatatcccactattctctctcaaattatggcttctttcttttgtta 440
Query: 244 ttctccctcctacacacacacacacacacacacacacacgcacacacacacacacacaca 303
|||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 441 ttctccctcctacacacacaca------------------cacacacacacacacacaca 482
Query: 304 cacacacagttatacacatgccaacaaacacacacaaaacatacacatatatatatgtaa 363
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 cacacagagttatacacatgccaacaaacacacacaaaacatacacatatatatatgtaa 542
Query: 364 acagatgacatttttatattagtttatatgtaaatacaacccgattagtccatttagtgt 423
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 543 acagatgacatttttatattagtttatatgtaaatacaacctgattagtccatttagtgt 602
Query: 424 tgcttgtatgtatgcagttttaggactaattgcttggtcttggaaaagcaattaggggtc 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 tgcttgtatgtatgcagttttaggactaattgcttggtcttggaaaagcaattaggggtc 662
Query: 484 tcatctctggggaagactgattcgtcctttctctgtagtcagtaagtgcctgtaactctc 543
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663 tcatctttggggaagactgattcgtcctttctctgtagtcagtaagtgcctgtaactctc 722
Query: 544 catcttatggtggggccttatgtgattttccccatccatgtcagtatgccagttggtgtt 603
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 723 catcttatggtggggccttatgtgattttccccatctatgtcagtatgccagttggtgtt 782
Query: 604 gtcattattcaggacttgtttaggcaactaatgttgatatttcctaggtactgcttctct 663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 783 gtcattattcaggacttgtttaggcaactaatgttgatatttcctaggtactgcttctct 842
Query: 664 gacccattttcccaacagatatctttgtccccacattctttcattgcta 712
|||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 843 gacccattttcccaacagatatctttgttcccacattctttcattgcta 891
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 54
Number of extensions: 12
Number of successful extensions: 12
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 1
Length of query: 712
Length of database: 1113
Length adjustment: 10
Effective length of query: 702
Effective length of database: 1103
Effective search space: 774306
Effective search space used: 774306
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no280_b09.g1 MSMg01no280_b09.g1 CHROMAT_FILE:
MSMg01no280_b09.g1 PHD_FILE: MSMg01no280_b09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:20:51 2005
(377 letters)
>mm_chr2_137401271_137402046
Length = 776
Score = 702 bits (363), Expect = 0.0
Identities = 373/377 (98%), Gaps = 1/377 (0%)
Strand = Plus / Minus
Query: 1 tttagaagctctcactaggtgccaaagcatccctccatccaatctttatcaggagtgttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 tttagaagctctcactaggtgccaaagcatccctccatccaatctttatcaggagtgttc 517
Query: 61 tcaccacgtcgcttaagaaaagtctccctgtaaaccaggtgatagtaatgagaatggctt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 tcaccacgtcgcttaagaaaagtctccctgtaaaccaggtgatagtaatgagaatggctt 457
Query: 121 ataccccagggattcattgctatttgaatttgagcttccaacaagtacagagagttggct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 ataccccagggattcattgctatttgaatttgagcttccaacaagtacagagagttggct 397
Query: 181 cacaatcaaaacacaacgaaaagcatttccaatgtgaataataatctctgggacaacttc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 cacaatcaaaacacaacgaaaagcatttccaatgtgaataataatctctgggacaacttc 337
Query: 241 attcctcttcactctggagacagacaagagtctcttctcatttgctctgatggattagcc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 attcctcttcactctggagacagacaagagtctcttctcatttgctctgatggattagcc 277
Query: 301 aaaactcaacaaaaaaaagactatgtggttgagactactacagannataattccagtcta 360
|||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 276 aaaactcaac-aaaaaaagactatgtggttgagactactacagaaaataattccagtcta 218
Query: 361 tgagtagaacaataaat 377
| |||||||||||||||
Sbjct: 217 ttagtagaacaataaat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 377
Length of database: 776
Length adjustment: 9
Effective length of query: 368
Effective length of database: 767
Effective search space: 282256
Effective search space used: 282256
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
