Query= MSMg01no280_b19.b1 MSMg01no280_b19.b1 CHROMAT_FILE:
MSMg01no280_b19.b1 PHD_FILE: MSMg01no280_b19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:20:53 2005
(705 letters)
>mm_chr2_160100675_160101779
Length = 1105
Score = 1191 bits (616), Expect = 0.0
Identities = 679/714 (95%), Gaps = 26/714 (3%)
Strand = Plus / Minus
Query: 5 gaattccaagaacattccagaaag----ctaactatgtcactggtggcgatgtcattcaa 60
||||||| ||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct: 1024 gaattcccagaacat----gaaagaaatctaactatgtcactggtggcgatgtcattcaa 969
Query: 61 gactatttgatctaggtatcccattggggttgtttaatttttagagtgtgtccttatctc 120
||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct: 968 --------gatctaggtatccgattggggttgtttattttttagagtgtgtccttatctc 917
Query: 121 tttctgtcctccttatttgtctcaatgtcctgccgtctctatctctatatctctctttgc 180
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 916 tttctgtcctccttatttgtctcaatgtcctgccatctctatctctatatctctctttgc 857
Query: 181 tttctctgtctctgtctctgtctacccatttgtg--cacacacacacatacatatacatg 238
||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct: 856 tttctctgtctctgtctctgtctacccctttgtgcacacacacacacatacatatacatg 797
Query: 239 tatacttgcttctgttctctggtttcttccttggagaagtgactgtaacaaacccatcct 298
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 796 tatacttgcttctgttctctggtttcttccttggagaagtgactgtaacaaacacatcct 737
Query: 299 tctttctgtctccttgatgcactctccccatttctgaggaatctagagaactatctaagg 358
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 736 tctttctgtctccttgatgcactctcccaatttctgaggaatctagagaactatctaaga 677
Query: 359 ttcccaaagtgagaaggtgaatgtgttgtgccattggtctgaaagggaataggcataatt 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 ttcccaaagtgagaaggtgaatgtgttgtgccattggtctgaaagggaataggcataatt 617
Query: 419 tatatccttccttggtgcagaaataagccgatgacaacggggccttgccagttgaagaga 478
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 616 tatatccttccttggtgcagaaataagccgatgacaacggggccttgccagttgcagaga 557
Query: 479 gacaatgggatgtctcagcatagggttcttaatctttcaacaactcttccctccactgtt 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 gacaatgggatgtctcagcatagggttcttaatctttcaacaactcttccctccactgtt 497
Query: 539 cattcctagctcatccagttctcccgtctctcttgattgctaaataagggacctcagcca 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 cattcctagctcatccagttctcccgtctctcttgattgctaaataagggacctcagcca 437
Query: 599 acgcccatatatgaactgatcctcattcattgattcattgattcattga--------ctc 650
||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 436 acgcccatatatgaactgatcctcattcattgattcattgattcattgattcattgactc 377
Query: 651 atctttccatttaatgctatgagctgctctgcaccagggcctgggcttgcaaga 704
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 atctttccatttaatgctatgagctgctctgcaccagggcctgggcttgcaaga 323
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 705
Length of database: 1105
Length adjustment: 10
Effective length of query: 695
Effective length of database: 1095
Effective search space: 761025
Effective search space used: 761025
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no280_b19.g1 MSMg01no280_b19.g1 CHROMAT_FILE:
MSMg01no280_b19.g1 PHD_FILE: MSMg01no280_b19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:20:53 2005
(368 letters)
>mm_chr2_159952801_159953578
Length = 778
Score = 551 bits (285), Expect = e-161
Identities = 336/367 (91%), Gaps = 24/367 (6%)
Strand = Plus / Plus
Query: 1 gtagctgatggctatgatctcagcactgagga------ggtaggagggctgctctggttt 54
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 201 gtagctgatggctatgatctcagcactgaggaggcagcggtaggagggctgctctggttt 260
Query: 55 cctctc----agagactggctgactgaagctgggagctgggaaactatggcagcatagca 110
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctctcccttagagactggctgactgaagctgggagctgggaaactatggcagcatagca 320
Query: 111 gagccctgaaggaccctctgcaaactcctgggcttcagtggagtctcagtggaggcacag 170
|||||||||||||||||||||| |||| || ||||||||||||||||||||||||||||
Sbjct: 321 gagccctgaaggaccctctgcagactcatgagcttcagtggagtctcagtggaggcacac 380
Query: 171 ggagatgcctccctatggtgctgtctagcctttcaaagagctcctaatgaatcagacaca 230
||| |||||||||||||||||||||| ||||| ||||||||||||||
Sbjct: 381 gga--------------gtgctgtctagcctttcaaagaactcctgatgaatcagacaca 426
Query: 231 gcatttcctgggagctcatgtgatggcagcactgagccccactctagttcactaacctct 290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 gcatttcctgggagctcatgtgatggcagcactgagccccactctagttcactaacctct 486
Query: 291 ctcatcttttctacgaggtaggatttttagtttgggtttgcttgggttttgtttgttttt 350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 ctcatcttttctacgaggtaggatttttagtttgggtttgcttgggttttgtttgttttt 546
Query: 351 aagtatg 357
|||||||
Sbjct: 547 aagtatg 553
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 368
Length of database: 778
Length adjustment: 9
Effective length of query: 359
Effective length of database: 769
Effective search space: 276071
Effective search space used: 276071
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
