BAC Information

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BAC

Clone NameMSMg01-280B21
Chromosome2 (Build37)
Map Location 138,533,461 - 138,533,772
singlet/doubletsinglet
Overlap genenone
Upstream geneBtbd3
Downstream geneLOC628103, C130053K05Rik, LOC100043792, 5430433G21Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-280B21.T7 (MSMg01no280_b21.b1)MSMg01-280B21.TJ (MSMg01no280_b21.g1)
ACCAG417290AG417291
length750755
length of high quality
(start - end)
312 (439 - 750)368 (388 - 755)
definitionCHROMAT_FILE: MSMg01no280_b21.b1 PHD_FILE: MSMg01no280_b21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:20:53 2005CHROMAT_FILE: MSMg01no280_b21.g1 PHD_FILE: MSMg01no280_b21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:20:53 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCCGCGG
AATTCTTTCTCTGTTACCACAAACTAGTTCAACTTGGACTCTACCAAGAA
CACCAAATTCTGTCTCATGTTTAGACAGCAAACCCTGTGGCTTCTACTTA
TTTACATGGCATATCCTCTTGTGTCTCTCACTTTAACCCATGGCTAAACA
TAAAGCTTAGCAGCTGTGCATGTATAGAAAAGAATTCCAGATGTATTTCA
GGAAGGAACAGAATATCCATTTTCTTAATTTCTAAGGTGCTTTTCATAAG
AAGCATATCTATTCAGGAAGATACCTATTTTAAAGTGCCATTCCCCTTAG
TTTTCTAATCAGCCGATCTTTGTGCTCACCTGCACATGTGCATAGTGGCA
GATGATGTAAATGGAGCCATGGTAGTTGAATAACACATGGAGGTGAATTG
CAACATATGTAGAAGTGGGTTATAAACATCAAATATATATAGCAAATGTG
ATCTTTTAACCTGTTAAGATGTGGCATCCTTTGTTCACCAGAGCAAAGTG
CCCTTGGTTAATGTTAGTCAAGTTAATGCTATCATTTAGTGCTAGCCAAG
CCTACTAGAGAAATTGGCAGACAAAGATGTATAGTATTGTGTGCCTGATA
CTACCAATAAGATGCAGGCTTAAAGGCAGAAAAAGTTCCGGAAGTGACTG
ACTCTAAAATGAAGGGGGATGGATACTCTAAAATCACCTTGAGGGTATCC

ACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTGATCTTTCCAAAACTTTTATCA
TGAATGGGTGTTGAATCTTGTCAAATGCTTTTTCTGCATCCAACGAGATG
ATCATGTGGTTTTTGTCTTTGAGTTTGTTTATATAATGGATTACATTGAT
GGATTTTCGTATATTAAACCATCCCTGCATCCCTGGAATAAAACCTACTT
GGTCAGGATGGATGATTGCTTTAATATGTTCTTGGATTCGGTTAGCAAGA
ATTTTATTGAGGATTTTTGCATCAATATTCATAAGAGAAATTGGTCTGAA
GTTCTCTATCTTTGTTGGTTCTTTCTGCGCCCCACGTATCAGAGTAATAG
TGGCTTCATAAAATGAGTTGGGTAGAGTACCTTCTACTTCTATTTTGTGA
AATAGTTTGTGCAGAACTGGAATTAGATCTTCTTTGAAGGTCTGATAGAA
CTCTGCACTAAACCCGTCTGGTCCTGGGCTTTTTTTGGCTGGGAGACTAT
TAATAACTGCTTCTATTTCTTTAGGTGATATGGGACTGTTTAGATGGTCA
ACTTGATCCTGACTCAACTTTGGTACCTGGTATCTGTCCAGAAATTTGTC
CATTTCATCCAGGTTTTCCAGTTTTGTTGAGTATAACCTTTTGTAGAAGG
ATCTGATGGTGTTTTGGATTTCTTCAGGATCTGTTGTTATGTCTCCCTTT
TCATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no280_b21.b1 MSMg01no280_b21.b1 CHROMAT_FILE:
MSMg01no280_b21.b1 PHD_FILE: MSMg01no280_b21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:20:53 2005
         (312 letters)



>mm_chr2_138533261_138533972
          Length = 712

 Score =  588 bits (304), Expect = e-172
 Identities = 310/312 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggaggtgaattgcaacatatgtagaagtgggttataaacatcaaatatatatagcaaatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggaggtgaattgcaacatatgtagaagtgggttataaacatcaaatatatatagcaaatg 260

                                                                       
Query: 61  tgatcttttaacctgttaagatgtggcatcctttgttcaccagagcaaagtgcccttggt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgatcttttaacctgttaagatgtggcatcctttgttcaccagagcaaagtgcccttggt 320

                                                                       
Query: 121 taatgttagtcaagttaatgctatcatttagtgctagccaagcctactagagaaattggc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taatgttagtcaagttaatgctatcatttagtgctagccaagcctactagagaaattggc 380

                                                                       
Query: 181 agacaaagatgtatagtattgtgtgcctgatactaccaataagatgcaggcttaaaggca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agacaaagatgtatagtattgtgtgcctgatactaccaataagatgcaggcttaaaggca 440

                                                                       
Query: 241 gaaaaagttccggaagtgactgactctaaaatgaagggggatggatactctaaaatcacc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  
Sbjct: 441 gaaaaagttccggaagtgactgactctaaaatgaagggggatggatactctaaaatcatt 500

                       
Query: 301 ttgagggtatcc 312
           ||||||||||||
Sbjct: 501 ttgagggtatcc 512


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 312
Length of database: 712
Length adjustment: 9
Effective length of query: 303
Effective length of database: 703
Effective search space:   213009
Effective search space used:   213009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)