BAC Information

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BAC

Clone NameMSMg01-280H15
Chromosome2 (Build37)
Map Location 129,780,852 - 129,781,222
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043736, Zc3h6, LOC668894, Ttl, LOC100043738, Rpo1-2, Chchd5, LOC545461, LOC100043431, Slc20a1, A730036I17Rik, LOC671466, Ckap2l, Il1a, Il1b, OTTMUSG00000015529, LOC668896, F830045P16Rik, Sirpa, Pdyn, Ppia-ps2_1620.1, Stk35
Downstream geneTgm3, AU015228, LOC100043438, Tgm6, Snrpb, Tmc2, Nol5a, Idh3b, Ebf4, LOC668899, Cpxm1, LOC100043446, 1700020A23Rik, 4933425O20Rik, A930025D01Rik, Vps16, Ptpra, Mrps26, Oxt, Avp, 1700012O15Rik, Ubox5, Fastkd5, Prosapip1, 2600009E05Rik, Itpa, Slc4a11, 4930402H24Rik, LOC100043766, C030014O09Rik, LOC627316, Atrn
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-280H15.T7 (MSMg01no280_h15.b1)MSMg01-280H15.TJ (MSMg01no280_h15.g1)
ACCAG417558AG417559
length753756
length of high quality
(start - end)
302 (378 - 679)371 (386 - 756)
definitionCHROMAT_FILE: MSMg01no280_h15.b1 PHD_FILE: MSMg01no280_h15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:21:19 2005CHROMAT_FILE: MSMg01no280_h15.g1 PHD_FILE: MSMg01no280_h15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:21:19 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCCTTTTTTCCGTTGGGTCTTTGTATGGTCTTGGTTTAGGAATATT
ACTGGCTTCTTTGAAAATAATCCCAAATGTTCTTTCATTTTCTGTTTTGT
AGAATAATTTGAAGAGCATTGGCGTGGTTCTGCTAGAATTCTGTGCTGAA
TCTATCTTTCCTGGGCTTTTTTAGTCGGGAGACTTTTAACTACCACTTCG
ATATCATTGGGAGTTAAGGCTCTTTTTTTTTTTTTTTAAAGATTTATTTA
TTATTATATCCAAGTCCACTGCTGCTATCTTCAGATGCACCAGAAGAGGG
CGTTAGATCTCATTACTAATGGCTGCGAGCCACCATGTGGTTGCTGGGAT
TTGAACTCAGGACCTTCGGAAGAGCAGCTCTTACCATGATCTATGATCAT
GATCTTCGGAAGAGTGCTCTTAACCACTGAGCCATCTCTCCAGCCCGAGT
TAAGGCTCTTTAAAAGCTTGTTTTTGTCTTATTGATTTAGTGTTTGCAGG
GCATATATATCTATAAATCTGTATGTTTCTTTTAGATTTTTCAGTTGGGT
GGAATATTGATTGTTAAGTGTATATCTATGGTTCTCTGAATTTCCTTAGT
GTCTACTGTAGTATTCACCTTTTCATCCCTGATTTCATTAATTTGAATCC
TTTCTGCTTTTTAATTGGTTAACTTGGCTAAAAGTTTGTCAATTTTGTTA
ATG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCCAGCTATCCCAACATGGAGCAAT
CACAGAGTCACAGACTGTCTTAGCCCATAGGCGCTTACAGGCCACAGAGT
CATCACCTAGCATCTTGTTTAAACACCAGAGCCGAGCCGAGCCGCTCAGG
TTGAGACATGTAGCAGAGCTCACGGGGCTCGGTCACAGGCCATCAGAGCT
GTGGGGTCACACCTCTCTTACAAAATTCTGTTTTCCACGAGATGCTCCAG
GCTTTTCTTGAACATTTTCAAGTAATATCTTCATTTGGAACTGTAGCGTC
TAGAGACAGGTATTTTTTTTTGAGCGCCCACACCATGCAGATTCAGAGTC
TGAATGTGTCACCTCCGTCTGGGAGAAGGGATGTTGATGCCCCCAAGTTT
ACTTCAGGGTTAGTCATTTGCTAGAACGACTCAGGACTTAGCCTATAGTA
ACAATTCAGCTAGGGGCAGAGATTTATTACAGTTAAAGGACCCTTTGTAA
CATCAAAGGGCAGGCAGAGGAGGGAGGGGAAGCAGAGGCTAAGGAAAGCC
AGGAGCTAACTGTGCGCTTCAGGTCTCCAACGATAAATCATGACAAGCTG
TGACAGGTGATTCCTTCCAGGGACACACCGGACTGGCAGTACTCAGAATA
CATTATCAGGCTTGTTACATAGATACTTTCTCCTTGGCATGCTTCAGATT
TCTGGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no280_h15.g1 MSMg01no280_h15.g1 CHROMAT_FILE:
MSMg01no280_h15.g1 PHD_FILE: MSMg01no280_h15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:21:19 2005
         (371 letters)



>mm_chr2_129780652_129781422
          Length = 771

 Score =  694 bits (359), Expect = 0.0
 Identities = 368/371 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgcagattcagagtctgaatgtgtcacctccgtctgggagaagggatgttgatgccccca 60
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 201 tgcagattcagagtctgaatgtgtcacctctgtctgggagaagggatgttgatgccccca 260

                                                                       
Query: 61  agtttacttcagggttagtcatttgctagaacgactcaggacttagcctatagtaacaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agtttacttcagggttagtcatttgctagaacgactcaggacttagcctatagtaacaat 320

                                                                       
Query: 121 tcagctaggggcagagatttattacagttaaaggaccctttgtaacatcaaagggcaggc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcagctaggggcagagatttattacagttaaaggaccctttgtaacatcaaagggcaggc 380

                                                                       
Query: 181 agaggagggaggggaagcagaggctaaggaaagccaggagctaactgtgcgcttcaggtc 240
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agaggagggaagggaagcagaggctaaggaaagccaggagctaactgtgcgcttcaggtc 440

                                                                       
Query: 241 tccaacgataaatcatgacaagctgtgacaggtgattccttccagggacacaccggactg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 441 tccaacgataaatcatgacaagctgtgacaggtgattccttccagggacacacaggactg 500

                                                                       
Query: 301 gcagtactcagaatacattatcaggcttgttacatagatactttctccttggcatgcttc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gcagtactcagaatacattatcaggcttgttacatagatactttctccttggcatgcttc 560

                      
Query: 361 agatttctggc 371
           |||||||||||
Sbjct: 561 agatttctggc 571


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 371
Length of database: 771
Length adjustment: 9
Effective length of query: 362
Effective length of database: 762
Effective search space:   275844
Effective search space used:   275844
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)