BAC Information

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BAC

Clone NameMSMg01-280N07
Chromosome2 (Build37)
Map Location 77,019,087 - 77,171,418
singlet/doubletdoublet
Overlap geneSestd1, LOC623706
Upstream genePde11a, Cyct, Drbp1, Osbpl6, Prkra, Dfnb59, Fkbp7, Plekha3, Ttn, 2610301F02Rik
Downstream geneLOC667906, Zfp533, BC003993, LOC667920, OTTMUSG00000016703
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-280N07.T7 (MSMg01no280_n07.b1)MSMg01-280N07.TJ (MSMg01no280_n07.g1)
ACCAG417823AG417824
length723724
length of high quality
(start - end)		679 (45 - 723)236 (125 - 360)
definitionCHROMAT_FILE: MSMg01no280_n07.b1 PHD_FILE: MSMg01no280_n07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:21:46 2005CHROMAT_FILE: MSMg01no280_n07.g1 PHD_FILE: MSMg01no280_n07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:21:46 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(77,019,087 - 77,019,761)(77,171,186 - 77,171,418)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTAAAATTTTACGTCTGGGGAACCGCTTGGGGGAGCTGTTTTGTGAC
AGACAGCATCCCTCCCCTCACACACCAACTACCACATTCAAATGTGATCG
ATATAATTTCTACCCCCAACTTCTCTTACTATTTCAACATGAGAATCAGA
AAAAATTGTTTACAACTTTTTACACACCCAAAATATAAAAATCAGGGCAC
AGAACAACCACACTGGGAAAAAGAGTGATAGTTTCCTTTTAAAAACCACC
TTGCGAGCCAGCAATTCTAAGTATTTACTCACGAGCACGTGAATAACTAT
ATTCATATGTATGTTCCTAATAATGACCACTGCAGCTTTGTTCATAGTTG
ACAGTCCTTCAAACAGCCCAGTTAGCCAATAGGAAACTGAGAAAACAAGT
GGCAATATCCAATCATGGGGACACCACTTAGTAATAACATAAGGATGAAT
TAATAATACACCAAGTCCACAAATAAACCTCCCAAATACCATGGCAGTAA
AGAAGCCTTGATGTGTGATATGAATTAAAATAAGTTCTGAAATAGAACAA
TCTAACTCACAATAGAAAGGAAGAACAGGGCTTGTCATTTGGGGACAGTG
ATGAGTGAGAGGGGAGAACTTTCTAGAGTGGTAGATGTCCTTTTCTATAG
CACGCCACATAACTATGAAACAG

CCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXTTTCCACGAAATCAGTGATGAGAAGCTACAATTTGCTCATC
CTTCAACAGAATAGATTATTCCTGTGTTCTTATGAGGAATCTGCATGCTG
TCAGAGAATCCATTTTTCTCTCAGAGGTCACATCTCCAAAGAAAGTCTTC
AATACTTGGCATCCCTCCTGCCTCTGATGCCCCTCATCTCCCTGACTCCT
ACTATATGACCCCTTTCCTTGAAGACTAGGCTTGTGTGTATTATATAGTT
TGTGTATGATGATAAAATTCTGATTGAAAGTAAGGTGATGAAATCCACAG
TCAGTGATTTCAATCATTTCACCCCCCCCCCCACACAGAAATGACTTGGA
GCCATTGTGTGATGGCATTGATCAAAGAAATATATTCATTATCGTGTTCA
TTCTTCCTAAATTCTATAAGGTGTTATCACTCCCGGCCATGAAGAAGGAA
GCTGGAGAGAGTCTTAGAGCCGAGAGTCAGGAAGTTTTAAGTGGCTGACA
GAACCAAGATCTCCTCACATAAGGTGTCATGGAGTATAAAATGTAACAAA
ATTTAACACAACTGTACACTAAATGTAAGGTTTCAATTCAGAAAATCCCT
AAATAAGGAAAACATGAACCTTAAACCCAAAAATGAGTCCATGGCTTATC
CTTTAGAACTGTTCTCTAACATCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no280_n07.b1 MSMg01no280_n07.b1 CHROMAT_FILE:
MSMg01no280_n07.b1 PHD_FILE: MSMg01no280_n07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:21:46 2005
         (679 letters)



>mm_chr2_77018883_77019961
          Length = 1079

 Score = 1259 bits (651), Expect = 0.0
 Identities = 669/675 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctaaaattttacgtctggggaaccgcttgggggagctgttttgtgacagacagca 64
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctaaaattttatgtctggggaaccgcttgggggagctgttttgtgacagacagca 264

                                                                       
Query: 65  tccctcccctcacacaccaactaccacattcaaatgtgatcgatataatttctaccccca 124
           |||||||||||| | |||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 265 tccctcccctcaaataccaactaccacattcaaatgtgagcgatataatttctaccccca 324

                                                                       
Query: 125 acttctcttactatttcaacatgagaatcagaaaaaattgtttacaactttttacacacc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 acttctcttactatttcaacatgagaatcagaaaaaattgtttacaactttttacacacc 384

                                                                       
Query: 185 caaaatataaaaatcagggcacagaacaaccacactgggaaaaagagtgatagtttcctt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 caaaatataaaaatcagggcacagaacaaccacactgggaaaaagagtgatagtttcctt 444

                                                                       
Query: 245 ttaaaaaccaccttgcgagccagcaattctaagtatttactcacgagcacgtgaataact 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ttaaaaaccaccttgcgagccagcaattctaagtatttactcacgagcacgtgaataact 504

                                                                       
Query: 305 atattcatatgtatgttcctaataatgaccactgcagctttgttcatagttgacagtcct 364
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 atattcatatgtatgctcctaataatgaccactgcagctttgttcatagttgacagtcct 564

                                                                       
Query: 365 tcaaacagcccagttagccaataggaaactgagaaaacaagtggcaatatccaatcatgg 424
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gcaaacagcccagttagccaataggaaactgagaaaacaagtggcaatatccaatcatgg 624

                                                                       
Query: 425 ggacaccacttagtaataacataaggatgaattaataatacaccaagtccacaaataaac 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ggacaccacttagtaataacataaggatgaattaataatacaccaagtccacaaataaac 684

                                                                       
Query: 485 ctcccaaataccatggcagtaaagaagccttgatgtgtgatatgaattaaaataagttct 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ctcccaaataccatggcagtaaagaagccttgatgtgtgatatgaattaaaataagttct 744

                                                                       
Query: 545 gaaatagaacaatctaactcacaatagaaaggaagaacagggcttgtcatttggggacag 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 gaaatagaacaatctaactcacaatagaaaggaagaacagggcttgtcatttggggacag 804

                                                                       
Query: 605 tgatgagtgagaggggagaactttctagagtggtagatgtccttttctatagcacgccac 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 tgatgagtgagaggggagaactttctagagtggtagatgtccttttctatagcacgccac 864

                          
Query: 665 ataactatgaaacag 679
           |||||||||||||||
Sbjct: 865 ataactatgaaacag 879


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 679
Length of database: 1079
Length adjustment: 10
Effective length of query: 669
Effective length of database: 1069
Effective search space:   715161
Effective search space used:   715161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no280_n07.g1 MSMg01no280_n07.g1 CHROMAT_FILE:
MSMg01no280_n07.g1 PHD_FILE: MSMg01no280_n07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:21:46 2005
         (236 letters)



>mm_chr2_77170986_77171621
          Length = 636

 Score =  420 bits (217), Expect = e-122
 Identities = 229/233 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgttcttatgaggaatctgcatgctgtcagagaatccatttttctctcagaggtcacatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 tgttcttatgaggaatctgcatgctgtcagagaatccatttttctctcagaggtcacatc 374

                                                                       
Query: 61  tccaaagaaagtcttcaatacttggcatccctcctgcctctgatgcccctcatctccctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 tccaaagaaagtcttcaatacttggcatccctcctgcctctgatgcccctcatctccctg 314

                                                                       
Query: 121 actcctactatatgacccctttccttgaagactaggcttgtgtgtattatatagtttgtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 actcctactatatgacccctttccttgaagactaggcttgtgtgtattatatagtttgtg 254

                                                                
Query: 181 tatgatgataaaattctgattgaaagtaaggtgatgaaatccacagtcagtga 233
           |||||||||||||||| ||  ||||||||||||||||||||||||||| ||||
Sbjct: 253 tatgatgataaaattccgacagaaagtaaggtgatgaaatccacagtctgtga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 236
Length of database: 636
Length adjustment: 9
Effective length of query: 227
Effective length of database: 627
Effective search space:   142329
Effective search space used:   142329
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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