Query= MSMg01no288_b05.b1 MSMg01no288_b05.b1 CHROMAT_FILE:
MSMg01no288_b05.b1 PHD_FILE: MSMg01no288_b05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:22:04 2005
(173 letters)
>mm_chr2_163448346_163448918
Length = 573
Score = 267 bits (138), Expect = 3e-76
Identities = 160/168 (95%), Gaps = 4/168 (2%)
Strand = Plus / Minus
Query: 4 ggaattcattgaaggcaacagcagaggctggctacagctggggaaactagttgacccagc 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 ggaattcattgaaggcaacagcagaggctggctacagctggggaaactagttgacccagc 310
Query: 64 ttgaattagtttcctttctcag-tcagcggatttcaatctgtggatcactggccctctgc 122
||||||||||||||||||| || ||||| |||||||||||||||||||||| ||||||||
Sbjct: 309 ttgaattagtttcctttct-aggtcagcagatttcaatctgtggatcactgcccctctgc 251
Query: 123 agggggg-tagtgtgtgggaggggtgttgtttttnancaaccctttta 169
||||||| ||||||||||| |||||||||||||| | |||||||||||
Sbjct: 250 agggggggtagtgtgtggg-ggggtgttgtttttgaacaaccctttta 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 173
Length of database: 573
Length adjustment: 8
Effective length of query: 165
Effective length of database: 565
Effective search space: 93225
Effective search space used: 93225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no288_b05.g1 MSMg01no288_b05.g1 CHROMAT_FILE:
MSMg01no288_b05.g1 PHD_FILE: MSMg01no288_b05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:22:04 2005
(628 letters)
>mm_chr2_163260317_163261344
Length = 1028
Score = 1152 bits (596), Expect = 0.0
Identities = 621/630 (98%), Gaps = 2/630 (0%)
Strand = Plus / Plus
Query: 1 gggcgaataaggagaaggtacatgctgtttatatgtgtcccccacccccaccctaccaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 199 gggcgaataaggagaaggtacatgctgtttatatgtgtcccccacccccaccccaccaga 258
Query: 61 taagcatggggtcttcctctgtttgctcctccctggtgtcccttaagccctcatttgtcc 120
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 taagcacggggtcttcctctgtttgctcctccctggtgtcccttaagccctcatttgtcc 318
Query: 121 ttgtaacagcacttgccacactgtgctatgatagtcaaggtccccacagaaacagctcac 180
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 319 ttgtaacagcacttgccacactgtgctatgatggtcaaggtccccacagaaacagctcac 378
Query: 181 tgagaaagaaactgaagtgctcttagacatcgagagctaggaaagcagagtgctggagag 240
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 379 tgagaaagaaactgaagtgctcttagacatcaagagctaggaaagcagagtgctggagag 438
Query: 241 gttatgatggacttgccatgagaagatggcgccacccatgaccaagcctggcctggttaa 300
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 ggcatgatggacttgccatgagaagatggcgccacccatgaccaagcctggcctggttaa 498
Query: 301 tagtgaggcactgtgactgtaatgggagagaaagtggaacctatagctgtaaatggattt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 tagtgaggcactgtgactgtaatgggagagaaagtggaacctatagctgtaaatggattt 558
Query: 361 taataaactattaattattaattattacccagttagcctcccaataactgagtcttatga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 taataaactattaattattaattattacccagttagcctcccaataactgagtcttatga 618
Query: 421 attattcaattagctcttgcacaattactgggggggggg--tcatccctaatctatgttt 478
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 619 attattcaattagctcttgcacaattactggggggggggggtcatccctaatctatgttt 678
Query: 479 ctagtcactagactgttaattcccagctgtgctcctcaaatgaatctcacctgctccagc 538
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 679 ctagtcactagactgttaattcccagctgtgttcctcaaatgaatctcacctgctccagc 738
Query: 539 aatctggcctgggggtggcggtgggacattttattagggccgtgttcctgatctgtcata 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 aatctggcctgggggtggcggtgggacattttattagggccgtgttcctgatctgtcata 798
Query: 599 tctaatggagaccctcattctctccatctt 628
||||||||||||||||||||||||||||||
Sbjct: 799 tctaatggagaccctcattctctccatctt 828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 628
Length of database: 1028
Length adjustment: 10
Effective length of query: 618
Effective length of database: 1018
Effective search space: 629124
Effective search space used: 629124
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
