BAC Information

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BAC

Clone NameMSMg01-288E02
Chromosome2 (Build37)
Map Location 105,649,578 - 105,817,111
singlet/doubletdoublet
Overlap geneElp4, Immp1l, LOC100043402, Dph4
Upstream geneLOC100042995, 2310047K21Rik, LOC668744, Prrg4, Ccdc73, Ga17, 2210415I11Rik, LOC622356, Wt1, 0610012H03Rik, Rcn1, Pax6os1, LOC100043391, Pax6, LOC100043394
Downstream geneLOC668765, Dcdc5, 9330126M15, C130023O10Rik, LOC677260, 2700007P21Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-288E02.T7 (MSMg01no288_e02.b1)MSMg01-288E02.TJ (MSMg01no288_e02.g1)
ACCAG418130AG418131
length715719
length of high quality
(start - end)		315 (50 - 364)234 (132 - 365)
definitionCHROMAT_FILE: MSMg01no288_e02.b1 PHD_FILE: MSMg01no288_e02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:22:18 2005CHROMAT_FILE: MSMg01no288_e02.g1 PHD_FILE: MSMg01no288_e02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:22:18 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(105,649,578 - 105,649,888)(105,816,879 - 105,817,111)
sequence
NAATTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCCTATTCTTAAAATGTTTTTCTGTTTTTTCTAAAAGACAGAG
GAGGAGGTAAATACATAGGCACTGCTTATTAATAACACTTCTTTATTCTC
TAGTTCTTATCTAAACTCACAATATCAGGAAGACGATAGATAAGGTACAA
ACTGAAGTGATCTTACCCTGAAGATAGTATGTAGTATATGCCTAGAGGAA
AAGAGTATGGGAGAAAATAGGACAAATCCAGTTTGGTACACCAACAGTCC
CAGCTACTCAGGATACAGCTGCTGGTAGATTGACTGAGTATAGGAGTTCA
AGTGCAGCCCAAGAATATTTTAAAACACCCCTATCAAATGGAGAGCTTTT
TTTTTTTTAATTTTAGAAACATGAAGGTCATGACAAGAACCAAGCTTGAA
TTTTGTCTAAATTTGAGGTGACTAGTAAGATTCTTATTGAGAGAGTAAAA
GCAGCAGCGAGGCACGATGTGCTGTGGGGCTTCCTGCATTCCTAGCATTT
AGGAGGGAGAGGAACAGGATCACTGTAAATTCAAAACTAGTGAAGTCTAT
AAAACAGGGGCCAGGACAGCCAGGTGTGTAGAAAAAAGCTTCTGTCTCCA
AAAAATAAGCAAAGCAAACCAAACAATAATAATAACAAAATCCCTTAATG
ATGCCAGAGGCAACG

NCTCCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCTGAAAAGAGCTTTTAT
GTTTTAAGACAGATTATAAGAAAGGCGCACATGTATTTTTTAATGTAAAT
GATATAAATTTGAGTTGGTAATACTTGAGGCCAGTAGATAATTGTGTAAA
TTATGTCCTAACGCTGACCCGTACAAGATACTTGAATTAGTCAGATTAGG
AGTTAAGTTTGATTTTAGGAATTTCAAAATTGACTGTAAAAATTTGCTTC
AGGTAAAAACTTGCAGATAAGCATCAAGAGATTTGTTTTTTGCTGACTGT
TTCTGGGAAAATAATTATTTTTTTTGACGCCCACCCTCCATCTAGACAGT
TGAGACTGGTGTCTTAGGACCCACACCAGAGAACAAAGACTCTCCAGGAG
GGTCCCCTGCTCATCTGAGTTGTCACTATTTTTACCATGTAAAGTATTTT
AAGATTATTTGTTATTGATTCTGAATAAAAGTTAACAAGTTTCAAATAAT
TAAAAACCTGTTGGCAAAAAAAAAAAAAAATGTTTGTAATTGTGGTGTGA
GCGCACACACCATTGGAGGATCTGATTTAATAGAACTGATCAGTGGGTTT
TAGGAAGTACTTATTTTCTACTTTAACCACTCTCAATTTCTCTGTGTTAA
CTTGACCCCATTGAAGTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no288_e02.b1 MSMg01no288_e02.b1 CHROMAT_FILE:
MSMg01no288_e02.b1 PHD_FILE: MSMg01no288_e02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:22:18 2005
         (315 letters)



>mm_chr2_105649374_105650088
          Length = 715

 Score =  594 bits (307), Expect = e-174
 Identities = 310/311 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcctattcttaaaatgtttttctgttttttctaaaagacagaggaggaggtaaata 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctattcttaaaatgtttttctgttttttctaaaagacagaggaggaggtaaata 264

                                                                       
Query: 65  cataggcactgcttattaataacacttctttattctctagttcttatctaaactcacaat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cataggcactgcttattaataacacttctttattctctagttcttatctaaactcacaat 324

                                                                       
Query: 125 atcaggaagacgatagataaggtacaaactgaagtgatcttaccctgaagatagtatgta 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atcaggaagacgatagataaggtacaaactgaagtgatcttaccctgaagatagtatgta 384

                                                                       
Query: 185 gtatatgcctagaggaaaagagtatgggagaaaataggacaaatccagtttggtacacca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gtatatgcctagaggaaaagagtatgggagaaaataggacaaatccagtttggtacacca 444

                                                                       
Query: 245 acagtcccagctactcaggatacagctgctggtagattgactgagtataggagttcaagt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 acagtcccagctactcaggatacagctgctggtagattgactgagtataggagttcaagt 504

                      
Query: 305 gcagcccaaga 315
           || ||||||||
Sbjct: 505 gctgcccaaga 515


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 715
Length adjustment: 9
Effective length of query: 306
Effective length of database: 706
Effective search space:   216036
Effective search space used:   216036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no288_e02.g1 MSMg01no288_e02.g1 CHROMAT_FILE:
MSMg01no288_e02.g1 PHD_FILE: MSMg01no288_e02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:22:18 2005
         (234 letters)



>mm_chr2_105816679_105817312
          Length = 634

 Score =  443 bits (229), Expect = e-129
 Identities = 232/233 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtattttttaatgtaaatgatataaatttgagttggtaatacttgaggccagtagataa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 tgtattttttaatgtaaatgatataaatttgagttggtaatacttgaggccagtagataa 374

                                                                       
Query: 61  ttgtgtaaattatgtcctaacgctgacccgtacaagatacttgaattagtcagattagga 120
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 373 ttgtgtaaattatgtcctaaggctgacccgtacaagatacttgaattagtcagattagga 314

                                                                       
Query: 121 gttaagtttgattttaggaatttcaaaattgactgtaaaaatttgcttcaggtaaaaact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 gttaagtttgattttaggaatttcaaaattgactgtaaaaatttgcttcaggtaaaaact 254

                                                                
Query: 181 tgcagataagcatcaagagatttgttttttgctgactgtttctgggaaaataa 233
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 tgcagataagcatcaagagatttgttttttgctgactgtttctgggaaaataa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 634
Length adjustment: 9
Effective length of query: 225
Effective length of database: 625
Effective search space:   140625
Effective search space used:   140625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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