Query= MSMg01no288_f01.b1 MSMg01no288_f01.b1 CHROMAT_FILE:
MSMg01no288_f01.b1 PHD_FILE: MSMg01no288_f01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:22:22 2005
(702 letters)
>mm_chr2_139354453_139355554
Length = 1102
Score = 1197 bits (619), Expect = 0.0
Identities = 671/689 (97%), Gaps = 3/689 (0%)
Strand = Plus / Minus
Query: 15 gaattcatgagtagattacagctcttaggaatctaacccaaagaacaattcttcagtcta 74
||||||||||||||| | ||||||||||||||||||||||||||||||||||||| |||
Sbjct: 1049 gaattcatgagtagaagaaagctcttaggaatctaacccaaagaacaattcttcagccta 990
Query: 75 aaagtctcaaacagcaactcaatatagtcatcttcactcccaagaacaaaggaagattct 134
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 989 aaagtctcaaacagcaattcaatatagtcatcttcactcccaagaacaaaggaagattct 930
Query: 135 gttatacaatcattaaaatgtaatgtgtacatttctctcttttttctaacaaatgattta 194
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 929 gttatacaatcattaaaatgtaatgtgtacatttctctcttttttctaacaaatgattta 870
Query: 195 aaaagatattatacaatatatgtgcaagtttattagtgatgctgttgatgaacacaacta 254
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 869 aaaagatattatacaatatatgtgcatgtttattagtgatgctgttgatgaacacaacta 810
Query: 255 aagaatggcacaaagtacttagatatgactgaatctatgttggagtaaggaaaggatccg 314
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 809 aagaatggcacaaagtacttagatatgactgaatctatgttggagtaaggaaaggatccg 750
Query: 315 aggtgcaagtgagagtccacagaaactgatgagtagaacaagaaatggtaaatgggtatc 374
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 749 aggtgcaagtgagagtccacagaaactgatgagtagaacaagaaatggtaaatgggtatc 690
Query: 375 aatggaattaacacttctctgttcctcttgctctgtccacttatttttggagtactgtgt 434
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 689 aatggaattaacacttctctgtccctcttgctctgtccacttatttttggagtactgtgt 630
Query: 435 cttcagtctagaaccttatgcacaacaggcaagtgttctaccacagaacagcattgccag 494
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 629 cttcagtctagaaccttatgcacaacaggcaagtgttctaccacagagcagcattgccag 570
Query: 495 ctctatatatttatgttaagtaccaaagaaactatgaagaaaactcaagaataaaagaaa 554
|| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 569 ctttatatatttatgttaagtaccaaagaaaatatgaagaaaactcaagaataaaagaaa 510
Query: 555 atcattaaagtaataaaagtactacactagggtcttcactgaatccaacggaagtattag 614
|||| |||||||||||||||| |||||||||| ||||||||||||||| |||||||||||
Sbjct: 509 atcactaaagtaataaaagtattacactagggccttcactgaatccaaaggaagtattag 450
Query: 615 agttagaccagatacaag-atgtccagaaagccaagccaagccaaagaaaacagaaaacc 673
|||||||||||||||| | || |||||||||||||||||||||||||||||||||||||
Sbjct: 449 agttagaccagatacaggcat--ccagaaagccaagccaagccaaagaaaacagaaaacc 392
Query: 674 tggcaatcgttaacccagtgattcttgtc 702
|||||||||||||||||||||||||||||
Sbjct: 391 tggcaatcgttaacccagtgattcttgtc 363
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 702
Length of database: 1102
Length adjustment: 10
Effective length of query: 692
Effective length of database: 1092
Effective search space: 755664
Effective search space used: 755664
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no288_f01.g1 MSMg01no288_f01.g1 CHROMAT_FILE:
MSMg01no288_f01.g1 PHD_FILE: MSMg01no288_f01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:22:22 2005
(291 letters)
>mm_chr2_139186827_139187517
Length = 691
Score = 540 bits (279), Expect = e-158
Identities = 288/291 (98%)
Strand = Plus / Plus
Query: 1 attttgctaacatttggaacacttgctacacaacagacacataaagtagtgcaaatataa 60
|||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct: 201 attttgctaacatttggaacacttgctacacaacagacacataaagcagtggaaatataa 260
Query: 61 gccatcaaatgcacaatccattttatttaaaactcacaattagtcttttaatttacaacc 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 261 gccatcaaatgcacaatccattttatttaaaactcacaattagtcttttaatttacaatc 320
Query: 121 ttacatattctggaagcctattgtgtactagaaacagagctagtcactggagaaataaga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttacatattctggaagcctattgtgtactagaaacagagctagtcactggagaaataaga 380
Query: 181 gtaaaccaggataaaccaggaccagtctctgccttccagactaggggcaaggtgaacaga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtaaaccaggataaaccaggaccagtctctgccttccagactaggggcaaggtgaacaga 440
Query: 241 caaaaatgggctattctggtgctatatagggagtgatttatacatgtcaga 291
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caaaaatgggctattctggtgctatatagggagtgatttatacatgtcaga 491
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space: 192324
Effective search space used: 192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
