Query= MSMg01no288_f07.b1 MSMg01no288_f07.b1 CHROMAT_FILE:
MSMg01no288_f07.b1 PHD_FILE: MSMg01no288_f07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:22:23 2005
(669 letters)
>mm_chr2_74564734_74565802
Length = 1069
Score = 1239 bits (641), Expect = 0.0
Identities = 659/665 (99%)
Strand = Plus / Plus
Query: 5 gaattcactcttctttgcactatgtccattctgggggctgcttcaggcgatggtgagtaa 64
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcactcttctttgaactatgtccattctgggggctgcttcaggcgatggtgagtaa 264
Query: 65 ggagggcatgggagcctagcaaagtcagtggaagacaaaagccgagattacctgccggaa 124
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ggagggcatgggaggttagcaaagtcagtggaagacaaaagccgagattacctgccggaa 324
Query: 125 attgggaccctggggatagaattagaactctattagcatctgtcagggactctcaaatgt 184
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 attgggaccccggggatagaattagaactctattagcatctgtcagggactctcaaatgt 384
Query: 185 ggcatggcaagtcacttgattacacgtatgttatttagttaaatttgtgaaaattatgag 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ggcatggcaagtcacttgattacacgtatgttatttagttaaatttgtgaaaattatgag 444
Query: 245 atgctcaccaacccggtgataaacatgctttcttcctattggctggcctggtcacatggc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 atgctcaccaacccggtgataaacatgctttcttcctattggctggcctggtcacatggc 504
Query: 305 cgcccaactttattcagttgacagcaagtaggagggcccaatggaaggagaaaaaagaca 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 cgcccaactttattcagttgacagcaagtaggagggcccaatggaaggagaaaaaagaca 564
Query: 365 acacgagaaaaattagtattttctaccttctgaaattaatggccatgagttcgtatatgg 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 acacgagaaaaattagtattttctaccttctgaaattaatggccatgagttcgtatatgg 624
Query: 425 tgaactctaagtacgtggaccccaagtttcctccgtgcgaggaatatttgcagggtggct 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tgaactctaagtacgtggaccccaagtttcctccgtgcgaggaatatttgcagggtggct 684
Query: 485 acctaggcgagcagggagccgactactacggcagcggtgcacagggcgccgacttccagc 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 acctaggcgagcagggagccgactactacggcagcggtgcacagggcgccgacttccagc 744
Query: 545 cctcggggctctacccacggcccgacttcggcgagcaacccttcggaggcggcgggcccg 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 cctcggggctctacccacggcccgacttcggcgagcaacccttcggaggcggcgggcccg 804
Query: 605 ggcctggcgcagcgctgcccgcgaggggtcacggacaggagccgagctgcccgggaagtc 664
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 805 ggcctggctcagcgctgcccgcgaggggtcacggacaggagccgagcggcccgggaagtc 864
Query: 665 attac 669
|||||
Sbjct: 865 attac 869
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 669
Length of database: 1069
Length adjustment: 10
Effective length of query: 659
Effective length of database: 1059
Effective search space: 697881
Effective search space used: 697881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no288_f07.g1 MSMg01no288_f07.g1 CHROMAT_FILE:
MSMg01no288_f07.g1 PHD_FILE: MSMg01no288_f07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:22:23 2005
(668 letters)
>mm_chr2_74748431_74749497
Length = 1067
Score = 1253 bits (648), Expect = 0.0
Identities = 663/668 (99%), Gaps = 1/668 (0%)
Strand = Plus / Minus
Query: 1 actgtgtagaccagcctggccttgtactcacagagatctgcctgcctctccctctcaaat 60
||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct: 961 actgtgtagaccagcctggccttgtactcacagagatctgcctgcctctgcctcccaaat 902
Query: 61 gctgagattaaaggtgtgcaccaccacctcccagaggcaccgattttctttttcaattca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 901 gctgagattaaaggtgtgcaccaccacctcccagaggcaccgattttctttttcaattca 842
Query: 121 gcatttgaataacatttcccatgtgtgatcctgctccaaactgcggctcctggctcctgt 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841 ccatttgaataacatttcccatgtgtgatcctgctccaaactgcggctcctggctcctgt 782
Query: 181 caacctaaaaacaaacattcagtgggccaggaaatggcactttattcaaacaatagatta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 caacctaaaaacaaacattcagtgggccaggaaatggcactttattcaaacaatagatta 722
Query: 241 gggatgaaatagtggttccaaggttgtttttgacacgtaaaggggctgaaatatttttat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 gggatgaaatagtggttccaaggttgtttttgacacgtaaaggggctgaaatatttttat 662
Query: 301 ccctttgctagctgttgtttctctagatacctaataactctgaagagacaatcgcagcct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 ccctttgctagctgttgtttctctagatacctaataactctgaagagacaatcgcagcct 602
Query: 361 gttatgtgcactgaaaccctgtccaatgcgaagtgatattttcctccctatttttcattt 420
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 gttatgtacactgaaaccctgtccaatgcgaagtgatattttcctccctatttttcattt 542
Query: 421 ctgcatgctggctccagccaacaatataaccattttcttttattgattttcttataaaat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 ctgcatgctggctccagccaacaatataaccattttcttttattgattttcttataaaat 482
Query: 481 gtatccttgttagattcattgatgactatacattactgagcacctgataaaatttcattg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 gtatccttgttagattcattgatgactatacattactgagcacctgataaaatttcattg 422
Query: 541 tgctattaccgctgcacaggaaatgagatctgcaggatgaaaaccacttctcaaggagcc 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tgctattaccgctgcacaggaaatgagatctgcaggatgaaaaccacttctcaaggagcc 362
Query: 601 aaggaaatgggttttgatacagaacgccacagaagggcatagatgtattgaaaactgatc 660
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 aagg-aatgggttttgatacagaacgccacagaagggcatagatgtattgaaaactgatc 303
Query: 661 agcaagag 668
||||||||
Sbjct: 302 agcaagag 295
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 668
Length of database: 1067
Length adjustment: 10
Effective length of query: 658
Effective length of database: 1057
Effective search space: 695506
Effective search space used: 695506
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
