BAC Information

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BAC

Clone NameMSMg01-288L23
Chromosome2 (Build37)
Map Location 103,135,447 - 103,135,741
singlet/doubletsinglet
Overlap geneEhf
Upstream geneTrim44, Fjx1, E430002G05Rik, Slc1a2, Cd44, Pdhx, Apip
Downstream geneElf5, Cat, Abtb2, Nat10, Caprin1, LOC433458, LOC100042961, LOC100042965, Lmo2, Fbxo3, Cd59b, Cd59a, A930018P22Rik, D430041D05Rik, LOC100043349
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-288L23.T7 (MSMg01no288_l23.b1)MSMg01-288L23.TJ (MSMg01no288_l23.g1)
ACCAG418488AG418489
length739742
length of high quality
(start - end)
194 (129 - 322)295 (443 - 737)
definitionCHROMAT_FILE: MSMg01no288_l23.b1 PHD_FILE: MSMg01no288_l23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:22:54 2005CHROMAT_FILE: MSMg01no288_l23.g1 PHD_FILE: MSMg01no288_l23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:22:54 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCATCTATAATTGCGGCGCTAATAGACTACTATAGGTCCGGATCAGCGGA
ATTCCTGATCTTTTTCCCAAAAAAAAATGAAGAAATGTTGAATTTTGTCA
AATGCTTTTTCAGCATCTATTGAACTGATAATGCATTTTTTCTTTGATTT
TGTTTATGTAGTGGACTACATTGATGGATTTCTGTATATTGAGCCATTCT
TACATCCTGGGATGAAGCCTACTTGATCGCTGTGAATGATCATTTTGATG
TGTTCTTGGAATCAGTTGGCAAGAGTTTTATTAAGTATTTTTACATTGAT
GTTAATAAGGGAAATTGGTCTGTTGATCATTTTCTTTGTTGGGTCTTTGT
GTGGTTTAGGTGTATTTTTTTTTGTCGCTCCATAGAACCAGTTGGGTAGT
GTTCCTTCTGTTTCTATTTTGCGGAATAAAAAGAAGAGAATTGGTATTAG
TTCTTCTTTGAAGGTCTGATAGAATTCTTCACGAAAACCATCTGGTGCTG
GGCTTTTCTTTTAGTTGGGAGTCTTTTAATGACTGCTTCTATTTCTTTAG
GGGTTATGGGGTTAGACAGTTTATCTGATCCTGATTTAACTTTGGCACCT
GGTATCTATCTAGAAAATTGTCTATTTCATCTAGATTTTCCAATTTAGTT
GATCATATTTTTTTGTTATAGGATCTGATGATATTTTTTTGAAATTTCTC
AGTTTCTGTTATTATGTCTCCATTTTCAGTTCTGATTTT
NCCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCCCGGGGAAAGCCTTTGTGGGGTTGA
GGTGCTCACCTTCATGGTGTTCTTCCACTTTCTCGTTTCCAGAGAGCTTC
TTCCACACATAGACTGCTGAGTTAAGAGAAGCAGAGCTATGGAAAGCTTT
GCTGGATCTCTCTTGGTGGAAATTAGGCTCCCAGAGGACACACCCAGTTT
CTTTAGGTTCTGAGGTATTCCCAGCACTTGCAGGTCTTCCCTCATACTTC
TGGTGCCCTCCGAAGGAACTCTAAATTCTTTTTAATTTTCTTCAGCGTTT
CCTGCTACTATTAGGGTNCATTTGTTTCCCCCCCCCCCCCTGAGGTGGCT
TTCAGCAGCCACTTCAACCCCTGAATCTACCAGAAAAATTCAACAAGAAG
CAGGAGTGAAGGGTTTGCTTTGGTTTGGTGTTGGGGATCGAATTAAGGGG
CTCTTACAAGCACAGCATGTGCATCTCACTAGGGGACGTCTTCAGTGGCT
CCACTACTCAAGTTGAAGGTTTCCTGATTCCTTCTGGGGGACCATGAGTC
AGAATGTGGTAGGAATTAGACTCCCATGTGCTCAAGGACACCTCACCTTC
TTGAGCACAGGATGACCAGCAAGTCTCCTAATCACATTTACGGGGGAAAA
ATCAATAAGCCATCTTGACATGCTTTTAAATGAAAAGTATGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no288_l23.g1 MSMg01no288_l23.g1 CHROMAT_FILE:
MSMg01no288_l23.g1 PHD_FILE: MSMg01no288_l23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:22:54 2005
         (295 letters)



>mm_chr2_103135156_103135850
          Length = 695

 Score =  524 bits (271), Expect = e-153
 Identities = 289/295 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   acaagaagcaggagtgaagggtttgctttggtttggtgttggggatcgaattaaggggct 60
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 acaagaagcaggagtaaagggtttgctttggtttggtgttggggatcgaattaaggggct 527

                                                                       
Query: 61  cttacaagcacagcatgtgcatctcactaggggacgtcttcagtggctccactactcaag 120
           |||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct: 526 cttacaagcacagcatgtgcatctcactagaggacgtcttcagcggctccactactcaag 467

                                                                       
Query: 121 ttgaaggtttcctgattccttctgggggaccatgagtcagaatgtggtaggaattagact 180
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 ttgaaggtttcctgattctttctgggggaccatgagtcagaatgtggtaggaattagact 407

                                                                       
Query: 181 cccatgtgctcaaggacacctcaccttcttgagcacaggatgaccagcaagtctcctaat 240
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||
Sbjct: 406 cccatgtgctcaaggacacctctccttcttgagcacaggatgaccagcaagtctcctcat 347

                                                                  
Query: 241 cacatttacgggggaaaaatcaataagccatcttgacatgcttttaaatgaaaag 295
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 cacatttacgggggaaaaatcaataagccatcttgacatgcttttaaatgaaaag 292


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 295
Length of database: 695
Length adjustment: 9
Effective length of query: 286
Effective length of database: 686
Effective search space:   196196
Effective search space used:   196196
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)