Query= MSMg01no288_o24.b1 MSMg01no288_o24.b1 CHROMAT_FILE:
MSMg01no288_o24.b1 PHD_FILE: MSMg01no288_o24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:23:08 2005
(700 letters)
>mm_chr18_28185712_28186810
Length = 1099
Score = 1249 bits (646), Expect = 0.0
Identities = 684/697 (98%), Gaps = 1/697 (0%)
Strand = Plus / Minus
Query: 4 ggaattcacttctggtttgctctgcacaaatacataagcaatgtattatcagtgccctca 63
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 899 ggaattcacttctggcatgctctgcacaaatacataagcaatgtattatcagtgccctca 840
Query: 64 atgacaggactgtccagacgggattcaattcaaaacccaattgtcttttcctctttgtac 123
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 839 atgacaggactgtccagatgggattcaattcaaaacccaattgtcttttcctctttgtag 780
Query: 124 acttataattggaatactgttgatcagattctgcttttaataaacatggcaaagcagaca 183
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 779 acttataattggaatgctgttgatcagattctgcttttaataaacatggcaaagcagaca 720
Query: 184 ggattttcctgaaacaatttatttgatagaaggcagtggaacatcatatgacagaaatga 243
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 719 ggattttcctgaaacaatttatttgatagaagacagtggaacatcatatgacagaaatga 660
Query: 244 tagaataagagtggatgctacagcagcccaagggaaagtatgttacagagtcctcgagtg 303
|||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||
Sbjct: 659 tagaataagagtggatgctacagcagcccaagggaaagtatgttgcagaatcctcgagtg 600
Query: 304 cacacagcaagaggtaggggaagctgcagattatccacagatattactgggcaatatgta 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 cacacagcaagaggtaggggaagctgcagattatccacagatattactgggcaatatgta 540
Query: 364 catacatagatcgccttctgaaggtggaattgtatcatcatccaataggcaaatgggaaa 423
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 catacatagatcgctttctgaaggtggaattgtatcatcatccaataggcaaatgggaaa 480
Query: 424 tagtaacagggatcattaatttaatattcaagcctgagcattgcattgaaaaagaccaaa 483
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 tattaacagggatcattaatttaatattcaagcctgagcattgcattgaaaaagaccaaa 420
Query: 484 ttgtattagagaagcctagaaccggttgacacaaaaacctaatgcaacagcaaataaatc 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 ttgtattagagaagcctagaaccggttgacacaaaaacctaatgcaacagcaaataaatc 360
Query: 544 tggcagagcaatttaaagctgaanagaaatagaaagataaatgatgtcataaaagattca 603
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 359 tggcagagcaatttaaagctgaaaagaaatagaaagataaatgatgtcataaaagattca 300
Query: 604 caggggcgtttttttaactgagctgctaaatattttaaaacagaatcaccaaggccattt 663
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 caggggcg-ttttttaactgagctgctaaatattttaaaacagaatcaccaaggccattt 241
Query: 664 tgtattaaaaacccaaatgagtggcgctctccattta 700
||||||||||||||||||||||||| |||||||||||
Sbjct: 240 tgtattaaaaacccaaatgagtggcactctccattta 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 700
Length of database: 1099
Length adjustment: 10
Effective length of query: 690
Effective length of database: 1089
Effective search space: 751410
Effective search space used: 751410
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no288_o24.g1 MSMg01no288_o24.g1 CHROMAT_FILE:
MSMg01no288_o24.g1 PHD_FILE: MSMg01no288_o24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:23:09 2005
(224 letters)
>mm_chr2_48130970_48131590
Length = 621
Score = 329 bits (170), Expect = 9e-95
Identities = 191/201 (95%), Gaps = 6/201 (2%)
Strand = Plus / Minus
Query: 1 actatatacaagtatagaactctcaaaggatatgttctttgaagagatatcactttggag 60
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 300 actatatacaagtatagaactctcaaaggatatgttctttgaagagatatca-tttggag 242
Query: 61 tgactagcctttattcctggttctctctcttttttttttttttttttagnataccttcaa 120
||||||||||||||||||||||||| |||||||||||||||| || | ||||||||
Sbjct: 241 tgactagcctttattcctggttctc-----ttttttttttttttttaagtacaccttcaa 187
Query: 121 gactatattagttagggttctccagaagaactgaacatataaacaatatgtatgtatata 180
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 186 gactatattagttagggttctccagaagaactgaacatataaacaatatgtatatatata 127
Query: 181 tatatatatatatatatatat 201
|||||||||||||||||||||
Sbjct: 126 tatatatatatatatatatat 106
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 68
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 224
Length of database: 621
Length adjustment: 9
Effective length of query: 215
Effective length of database: 612
Effective search space: 131580
Effective search space used: 131580
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
